8GD9
Cryo-EM Structure of the Prostaglandin E2 Receptor 4 Coupled to G Protein
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | polymer | 248 | 29145.1 | 1 | UniProt (P63092) Pfam (PF00503) In PDB | Homo sapiens (human) | Adenylate cyclase-stimulating G alpha protein |
2 | B | Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 | polymer | 358 | 39418.1 | 1 | UniProt (P62873) Pfam (PF00400) In PDB | Homo sapiens (human) | Transducin beta chain 1 |
3 | G | Guanine nucleotide-binding protein subunit gamma | polymer | 108 | 12104.9 | 1 | UniProt (A0A7J7XNR4) Pfam (PF00631) UniProt (by SIFTS) (P59768) In PDB | Homo sapiens (human) | |
4 | N | NB35 | polymer | 128 | 13885.4 | 1 | Lama glama (llama) | ||
5 | R | Prostaglandin E2 receptor EP4 subtype | polymer | 488 | 53173.3 | 1 | UniProt (P35408) Pfam (PF00001) In PDB | Homo sapiens (human) | PGE receptor EP4 subtype,PGE2 receptor EP4 subtype,Prostanoid EP4 receptor |
6 | R | 4-({2-[(1R,2R,3R,5S)-3,5-dihydroxy-2-{(3S)-3-hydroxy-4-[3-(methoxymethyl)phenyl]butyl}cyclopentyl]ethyl}sulfanyl)butanoic acid | non-polymer | 440.6 | 1 | Chemie (Z2C) |
Sequence modifications
A: 1 - 197 (UniProt: P63092)
A: 198 - 394 (UniProt: P63092)
B: 2 - 340 (UniProt: P62873)
G: -9 - 71 (UniProt: A0A7J7XNR4)
A: 198 - 394 (UniProt: P63092)
PDB | External Database | Details |
---|---|---|
Ala 226 | Gly 227 | conflict |
Ala 268 | Glu 269 | conflict |
Lys 271 | Asn 272 | conflict |
Asp 274 | Lys 275 | conflict |
Lys 280 | Arg 281 | conflict |
Asp 284 | Thr 285 | conflict |
Thr 285 | Ile 286 | conflict |
PDB | External Database | Details |
---|---|---|
Met -17 | - | expression tag |
His -16 | - | expression tag |
His -15 | - | expression tag |
His -14 | - | expression tag |
His -13 | - | expression tag |
His -12 | - | expression tag |
His -11 | - | expression tag |
Leu -10 | - | expression tag |
Glu -9 | - | expression tag |
Val -8 | - | expression tag |
Leu -7 | - | expression tag |
Phe -6 | - | expression tag |
Gln -5 | - | expression tag |
Gly -4 | - | expression tag |
Pro -3 | - | expression tag |
Gly -2 | - | expression tag |
Ser -1 | - | expression tag |
Ser 0 | - | expression tag |
Gly 1 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Met -36 | - | expression tag |
Trp -35 | - | expression tag |
Arg -34 | - | expression tag |
Glu -33 | - | expression tag |
Leu -32 | - | expression tag |
Pro -31 | - | expression tag |
Leu -30 | - | expression tag |
Gly -29 | - | expression tag |
Leu -28 | - | expression tag |
Gly -27 | - | expression tag |
Glu -26 | - | expression tag |
Leu -25 | - | expression tag |
His -24 | - | expression tag |
Lys -23 | - | expression tag |
Asp -22 | - | expression tag |
His -21 | - | expression tag |
Gln -20 | - | expression tag |
Ala -19 | - | expression tag |
Ser -18 | - | expression tag |
Arg -17 | - | expression tag |
Lys -16 | - | expression tag |
Leu -15 | - | expression tag |
Glu -14 | - | expression tag |
Pro -13 | - | expression tag |
Glu -12 | - | expression tag |
Leu -11 | - | expression tag |
Trp -10 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 5 |
Total formula weight | 147726.9 | |
Non-Polymers* | Number of molecules | 1 |
Total formula weight | 440.6 | |
All* | Total formula weight | 148167.5 |