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8G9C

Diphosphoinositol polyphosphate phosphohydrolase 1 (DIPP1/NUDT3) in complex with 5- difluoromethylenebisphosphonate inositol pentakisphosphate (5-PCF2P-IP5), an analogue of 5-InsP7

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
Diphosphoinositol polyphosphate phosphohydrolase 1polymer17219497.01UniProt (O95989)
Pfam (PF00293)
Homo sapiens (human)DIPP-1,Diadenosine 5',5'''-P1,P6-hexaphosphate hydrolase 1,Nucleoside diphosphate-linked moiety X motif 3,Nudix motif 3
2B
(A)
{difluoro[(R)-hydroxy{[(1s,2R,3S,4S,5R,6S)-2,3,4,5,6-pentakis(phosphonooxy)cyclohexyl]oxy}phosphoryl]methyl}phosphonic acidnon-polymer774.01Chemie (YUT)
3C, D, E, F
(A)
MAGNESIUM IONnon-polymer24.34Chemie (MG)
4G, H
(A)
CHLORIDE IONnon-polymer35.52Chemie (CL)
5I
(A)
FLUORIDE IONnon-polymer19.01Chemie (F)
6J
(A)
waterwater18.0111Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains1
Total formula weight19497.0
Non-Polymers*Number of molecules8
Total formula weight961.1
All*Total formula weight20458.1
*Water molecules are not included.

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PDB entries from 2025-08-06

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