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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

8G7P

Structure of the Escherichia coli 70S ribosome in complex with EF-Tu and Ile-tRNAIle(LAU) bound to the cognate AUA codon (Structure I)

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1a16S Ribosomal RNApolymer1542499873.41GenBank (1758835854)Escherichia coli
2b30S ribosomal protein S2polymer24126795.71UniProt (J7QM75)
Pfam (PF00318)
In PDB		Escherichia coli
3c30S ribosomal protein S3polymer23326031.31UniProt (B7MCS9)
Pfam (PF07650)
Pfam (PF00189)
In PDB		Escherichia coli
4d30S ribosomal protein S4polymer20623514.21UniProt (P0A7V8)
Pfam (PF00163)
Pfam (PF01479)
In PDB		Escherichia coli
5e30S ribosomal protein S5polymer16717629.41UniProt (P0A7W1)
Pfam (PF00333)
Pfam (PF03719)
In PDB		Escherichia coli
6f30S ribosomal protein S6polymer13115211.11UniProt (C3SFQ7)
Pfam (PF01250)
In PDB		Escherichia coli
7g30S ribosomal protein S7polymer15617637.41UniProt (P02359)
Pfam (PF00177)
In PDB		Escherichia coliSmall ribosomal subunit protein uS7
8h30S ribosomal protein S8polymer13014146.61UniProt (D7XKZ3)
Pfam (PF00410)
In PDB		Escherichia coli
9i30S ribosomal protein S9polymer13014886.31UniProt (A0A1X3LT86)
In PDB		Escherichia coli
10j30S ribosomal protein S10polymer10311755.61UniProt (V0ANK5)
Pfam (PF00338)
In PDB		Escherichia coli
11k30S ribosomal protein S11polymer12913872.01UniProt (A0A0H3PWX2)
Pfam (PF00411)
In PDB		Escherichia coli
12l30S ribosomal protein S12polymer12413814.21UniProt (A0A0F1AUC4)
Pfam (PF00164)
In PDB		Escherichia coli
13m30S ribosomal protein S13polymer11813128.51UniProt (A0A7U9IV78)
Pfam (PF00416)
In PDB		Escherichia coli
14n30S ribosomal protein S14polymer10111606.61UniProt (U9Y6H3)
In PDB		Escherichia coli
15o30S ribosomal protein S15polymer8910290.81UniProt (D8EB41)
In PDB		Escherichia coli
16p30S ribosomal protein S16polymer829207.61UniProt (C3SYP2)
Pfam (PF00886)
In PDB		Escherichia coli
17q30S ribosomal protein S17polymer849724.51UniProt (A0A8E0MHL6)
In PDB		Escherichia coli
18r30S ribosomal protein S18polymer759005.51UniProt (A0A0E2KXL3)
Pfam (PF01084)
In PDB		Escherichia coli
19s30S ribosomal protein S19polymer9210455.41UniProt (S1EA57)
Pfam (PF00203)
In PDB		Escherichia coli
20t30S ribosomal protein S20polymer879708.51UniProt (C3TRH7)
Pfam (PF01649)
In PDB		Escherichia coli
21u30S ribosomal protein S21polymer718524.01UniProt (A0A0E2L2J1)
Pfam (PF01165)
In PDB		Escherichia coli
22w, yIsoleucine tRNApolymer7624884.12Escherichia coli
23xP-site initiator tRNApolymer7724846.91GenBank (732678099)Escherichia coli
24vM-I mRNApolymer278878.51Escherichia phage T4
25zElongation factor Tupolymer39243152.21UniProt (E2QJ06)
Pfam (PF00009)
Pfam (PF03144)
Pfam (PF03143)
In PDB		Escherichia coliEF-Tu
26A23S Ribosomal RNApolymer2904941811.61Escherichia coli
27B5S Ribosomal RNApolymer12038814.11GenBank (1817378070)Escherichia coli
28C50S ribosomal protein L2polymer27329923.61UniProt (P60422)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Escherichia coliLarge ribosomal subunit protein uL2
29D50S ribosomal protein L3polymer20922291.61UniProt (U9Y9G2)
Pfam (PF00297)
In PDB		Escherichia coli
30E50S ribosomal protein L4polymer20122121.61UniProt (A1AGK6)
Pfam (PF00573)
In PDB		Escherichia coli
31F50S ribosomal protein L5polymer17920333.61UniProt (A0A829CFT8)
In PDB		Escherichia coli
32G50S ribosomal protein L6polymer17718932.81UniProt (C3SR17)
Pfam (PF00347)
In PDB		Escherichia coli
33H50S ribosomal protein L9polymer14915789.01UniProt (V0YZK9)
In PDB		Escherichia coli
34J50S ribosomal protein L11polymer14214894.41UniProt (P0A7J7)
Pfam (PF03946)
Pfam (PF00298)
In PDB		Escherichia coliLarge ribosomal subunit protein uL11
35L50S ribosomal protein L13polymer14216050.61UniProt (S1EW51)
Pfam (PF00572)
In PDB		Escherichia coli
36M50S ribosomal protein L14polymer12313565.11UniProt (S1NW45)
Pfam (PF00238)
In PDB		Escherichia coli
37N50S ribosomal protein L15polymer14414994.41UniProt (A0A829CJY0)
In PDB		Escherichia coli
38O50S ribosomal protein L16polymer13615329.31UniProt (E6BI61)
Pfam (PF00252)
In PDB		Escherichia coli
39P50S ribosomal protein L17polymer12714393.71UniProt (A0A1X3LC97)
In PDB		Escherichia coli
40Q50S ribosomal protein L18polymer11712794.71UniProt (E3PKY8)
In PDB		Escherichia coli
41R50S ribosomal protein L19polymer11513159.31UniProt (V0AJX1)
Pfam (PF01245)
In PDB		Escherichia coli
42S50S ribosomal protein L20polymer11813528.01UniProt (B7MAS6)
Pfam (PF00453)
In PDB		Escherichia coli
43TRibosomal protein L21polymer10311586.41UniProt (A0A829CSJ4)
In PDB		Escherichia coli
44U50S ribosomal protein L22polymer11012253.41UniProt (P61175)
Pfam (PF00237)
In PDB		Escherichia coliLarge ribosomal subunit protein uL22
45V50S ribosomal protein L23polymer10011222.21UniProt (A0A829CFV1)
In PDB		Escherichia coli
46W50S ribosomal protein L24polymer10411339.31UniProt (A0A1X3KWX7)
Pfam (PF00467)
Pfam (PF17136)
In PDB		Escherichia coli
47X50S ribosomal protein L25polymer9410713.51UniProt (D7XH79)
Pfam (PF01386)
In PDB		Escherichia coli
48Y50S ribosomal protein L27polymer859146.51UniProt (P0A7L8)
Pfam (PF01016)
In PDB		Escherichia coliLarge ribosomal subunit protein bL27
49Z50S ribosomal protein L28polymer789027.61UniProt (A0A1X3JA73)
Pfam (PF00830)
In PDB		Escherichia coli
50150S ribosomal protein L29polymer637286.51UniProt (D6IEL0)
Pfam (PF00831)
In PDB		Escherichia coli
51250S ribosomal protein L30polymer596554.81UniProt (V0YKA9)
In PDB		Escherichia coli
52350S ribosomal protein L31polymer707887.11UniProt (P0A7M9)
Pfam (PF01197)
In PDB		Escherichia coliLarge ribosomal subunit protein bL31-A
53450S ribosomal protein L32polymer576463.41UniProt (D7XI28)
Pfam (PF01783)
In PDB		Escherichia coli
54550S ribosomal protein L33polymer556388.61UniProt (F4NQ61)
In PDB		Escherichia coli
55650S ribosomal protein L34polymer465397.51UniProt (B7MGC4)
Pfam (PF00468)
In PDB		Escherichia coli
56750S ribosomal protein L35polymer657313.01UniProt (P0A7Q1)
Pfam (PF01632)
In PDB		Escherichia coliLarge ribosomal subunit protein bL35,Ribosomal protein A
57850S ribosomal protein L36polymer384377.41UniProt (A0A0E2L017)
Pfam (PF00444)
In PDB		Escherichia coli
58A, a, G, 6, L...MAGNESIUM IONnon-polymer24.3876Chemie (MG)
59l, aPOTASSIUM IONnon-polymer39.12Chemie (K)
60w, yISOLEUCINEnon-polymer131.22Chemie (ILE)
61zPHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTERnon-polymer521.21Chemie (GCP)
628, 3ZINC IONnon-polymer65.42Chemie (ZN)
63waterwater18.0716Chemie (HOH)
Sequence modifications
k: 1 - 129 (UniProt: A0A0H3PWX2)
PDBExternal DatabaseDetails
Ias 119Asn 119modified residue
O: 1 - 136 (UniProt: E6BI61)
PDBExternal DatabaseDetails
Ms6 82Met 82modified residue
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains58
Total formula weight2279148.5
Non-Polymers*Number of molecules883
Total formula weight22283.7
All*Total formula weight2301432.3
*Water molecules are not included.

219515

PDB entries from 2024-05-08

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