8G70
SARS-CoV-2 spike/nanobody mixture complex
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B, D | Spike glycoprotein | polymer | 1234 | 136832.5 | 3 | UniProt (P0DTC2) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601) In PDB | Severe acute respiratory syndrome coronavirus 2 | S glycoprotein,E2,Peplomer protein |
2 | E, H, I | Nanosota-5 | polymer | 137 | 15174.7 | 3 | Vicugna pacos (alpaca) | ||
3 | G, F, K | Nanosota-6 | polymer | 141 | 15342.9 | 3 | Vicugna pacos (alpaca) | ||
4 | N | Nanosota-4 | polymer | 150 | 16430.0 | 1 | Vicugna pacos (alpaca) | ||
5 | O, M | Nanosota-3 | polymer | 138 | 15088.7 | 2 | Vicugna pacos (alpaca) | ||
6 | P, C, J, L, Q... | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 12 | In PDB GlyTouCan (G42666HT) | |||
7 | A, B, D | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 45 | Chemie (NAG) |
Sequence modifications
A, B, D: 14 - 1211 (UniProt: P0DTC2)
PDB | External Database | Details |
---|---|---|
Gly 614 | Asp 614 | conflict |
Ala 682 | Arg 682 | conflict |
Gly 683 | Arg 683 | conflict |
Pro 817 | Phe 817 | conflict |
Pro 892 | Ala 892 | conflict |
Pro 899 | Ala 899 | conflict |
Pro 942 | Ala 942 | conflict |
Pro 986 | Lys 986 | conflict |
Pro 987 | Val 987 | conflict |
Gly 1212 | - | expression tag |
Ser 1213 | - | expression tag |
Gly 1214 | - | expression tag |
Tyr 1215 | - | expression tag |
Ile 1216 | - | expression tag |
Pro 1217 | - | expression tag |
Glu 1218 | - | expression tag |
Ala 1219 | - | expression tag |
Pro 1220 | - | expression tag |
Arg 1221 | - | expression tag |
Asp 1222 | - | expression tag |
Gly 1223 | - | expression tag |
Gln 1224 | - | expression tag |
Ala 1225 | - | expression tag |
Tyr 1226 | - | expression tag |
Val 1227 | - | expression tag |
Arg 1228 | - | expression tag |
Lys 1229 | - | expression tag |
Asp 1230 | - | expression tag |
Gly 1231 | - | expression tag |
Glu 1232 | - | expression tag |
Trp 1233 | - | expression tag |
Val 1234 | - | expression tag |
Leu 1235 | - | expression tag |
Leu 1236 | - | expression tag |
Ser 1237 | - | expression tag |
Thr 1238 | - | expression tag |
Phe 1239 | - | expression tag |
Leu 1240 | - | expression tag |
Gly 1241 | - | expression tag |
His 1242 | - | expression tag |
His 1243 | - | expression tag |
His 1244 | - | expression tag |
His 1245 | - | expression tag |
His 1246 | - | expression tag |
His 1247 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 12 |
Total formula weight | 548657.8 | |
Branched | Number of molecules | 12 |
Total formula weight | 5092.8 | |
Non-Polymers* | Number of molecules | 45 |
Total formula weight | 9954.4 | |
All* | Total formula weight | 563704.9 |