8G6G
H2BK120ub+H3K79me2-modified nucleosome ubiquitin position 5
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, E | Histone H3 | polymer | 136 | 15430.1 | 2 | UniProt (A0A310TTQ1) Pfam (PF00125) UniProt (by SIFTS) (P84233) In PDB | Xenopus laevis (African clawed frog) | |
| 2 | B, F | Histone H4 | polymer | 103 | 11394.4 | 2 | UniProt (P62799) Pfam (PF15511) In PDB | Xenopus laevis (African clawed frog) | |
| 3 | C, G | Histone H2A | polymer | 130 | 14109.4 | 2 | UniProt (Q6AZJ8) Pfam (PF00125) Pfam (PF16211) UniProt (by SIFTS) (P06897) In PDB | Xenopus laevis (African clawed frog) | |
| 4 | D, H | Histone H2B 1.1 | polymer | 123 | 13629.9 | 2 | UniProt (P02281) Pfam (PF00125) In PDB | Xenopus laevis (African clawed frog) | H2B1.1 |
| 5 | I | 601 DNA (185-MER) | polymer | 185 | 56796.2 | 1 | synthetic construct | ||
| 6 | J | 601 DNA (185-MER) | polymer | 185 | 57440.5 | 1 | synthetic construct | ||
| 7 | K | Ubiquitin | polymer | 80 | 9036.4 | 1 | UniProt (P0CG47) Pfam (PF00240) In PDB | Homo sapiens (human) |
Sequence modifications
A, E: 0 - 135 (UniProt: A0A310TTQ1)
D, H: 1 - 122 (UniProt: P02281)
K: 1 - 76 (UniProt: P0CG47)
| PDB | External Database | Details |
|---|---|---|
| Ala 110 | Cys 111 | engineered mutation |
| PDB | External Database | Details |
|---|---|---|
| Met 0 | - | expression tag |
| Thr 29 | Ser 33 | engineered mutation |
| Cys 117 | Lys 121 | engineered mutation |
| PDB | External Database | Details |
|---|---|---|
| Gly -3 | - | expression tag |
| Ser -2 | - | expression tag |
| His -1 | - | expression tag |
| Met 0 | - | expression tag |
| Cys 76 | Gly 76 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 11 |
| Total formula weight | 232400.8 | |
| All* | Total formula weight | 232400.8 |
