8G4S
40S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome with Emetine bound in V2 conformation with mRNA and three tRNAs.
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (2) | 18S rRNA | polymer | 1451 | 470516.8 | 1 | GenBank (2333213660) | Giardia intestinalis assemblage A | |
| 2 | B (A) | 40S ribosomal protein SA | polymer | 245 | 28101.8 | 1 | UniProt (A8BE86) Pfam (PF00318) | Giardia intestinalis assemblage A | |
| 3 | C (B) | 40S ribosomal protein S3a | polymer | 248 | 28413.1 | 1 | UniProt (A8BS79) Pfam (PF01015) | Giardia intestinalis assemblage A | |
| 4 | D (C) | Ribosomal protein S2 | polymer | 242 | 26765.7 | 1 | UniProt (A8BMZ1) Pfam (PF00333) Pfam (PF03719) | Giardia intestinalis assemblage A | |
| 5 | E (D) | Ribosomal protein S3 | polymer | 217 | 24779.1 | 1 | UniProt (A8B8Z2) Pfam (PF00189) | Giardia intestinalis assemblage A | |
| 6 | F (E) | 40S ribosomal protein S4 | polymer | 268 | 30464.8 | 1 | UniProt (A8BFE3) Pfam (PF08071) Pfam (PF00900) Pfam (PF16121) | Giardia intestinalis assemblage A | |
| 7 | G (F) | SSU ribosomal protein S7P (Fragment) | polymer | 190 | 21058.3 | 1 | UniProt (V6T8P6) Pfam (PF00177) UniProt (by SIFTS) (A8BZD3) | Giardia intestinalis assemblage A | |
| 8 | H (G) | 40S ribosomal protein S6 | polymer | 248 | 28084.1 | 1 | UniProt (A8B6L8) Pfam (PF01092) | Giardia intestinalis assemblage A | |
| 9 | I (H) | 40S ribosomal protein S7 | polymer | 201 | 23073.0 | 1 | UniProt (V6TBA3) Pfam (PF01251) | Giardia intestinalis assemblage A | |
| 10 | J (I) | 40S ribosomal protein S8 | polymer | 174 | 19451.6 | 1 | UniProt (A8B252) Pfam (PF01201) | Giardia intestinalis assemblage A | |
| 11 | K (J) | Ribosomal protein S9 | polymer | 189 | 21699.3 | 1 | UniProt (A8BKS8) Pfam (PF00163) Pfam (PF01479) | Giardia intestinalis assemblage A | |
| 12 | L (K) | Ribosomal protein S10B | polymer | 134 | 15406.6 | 1 | UniProt (A8BRX3) Pfam (PF03501) | Giardia intestinalis assemblage A | |
| 13 | M (L) | SSU ribosomal protein S17P | polymer | 199 | 23160.9 | 1 | UniProt (V6TF82) Pfam (PF16205) Pfam (PF00366) | Giardia intestinalis assemblage A | |
| 14 | N (N) | Ribosomal protein S13 | polymer | 154 | 17627.9 | 1 | UniProt (A8BE02) Pfam (PF08069) Pfam (PF00312) | Giardia intestinalis assemblage A | |
| 15 | O (O) | Ribosomal protein S14 | polymer | 145 | 15756.0 | 1 | UniProt (E2RU83) Pfam (PF00411) | Giardia intestinalis assemblage A | |
| 16 | P (P) | Ribosomal protein S15 | polymer | 145 | 16728.1 | 1 | UniProt (A8BBP3) Pfam (PF00203) | Giardia intestinalis assemblage A | |
| 17 | Q (Q) | Ribosomal protein S16 | polymer | 158 | 17634.6 | 1 | UniProt (A8BKC6) Pfam (PF00380) | Giardia intestinalis assemblage A | |
| 18 | R (R) | Ribosomal protein S17 | polymer | 137 | 15757.4 | 1 | UniProt (A8BRG5) Pfam (PF00833) | Giardia intestinalis assemblage A | |
| 19 | S (S) | Ribosomal protein S18 | polymer | 154 | 17510.3 | 1 | UniProt (A8BZ58) Pfam (PF00416) | Giardia intestinalis assemblage A | |
| 20 | T (T) | SSU ribosomal protein S19E (Fragment) | polymer | 158 | 17816.8 | 1 | UniProt (V6TE85) Pfam (PF01090) | Giardia intestinalis assemblage A | |
| 21 | U (U) | Ribosomal protein S20 | polymer | 126 | 14073.2 | 1 | UniProt (A8B4G0) Pfam (PF00338) | Giardia intestinalis assemblage A | |
| 22 | V (V) | 40S ribosomal protein S21 | polymer | 89 | 9686.1 | 1 | UniProt (A8B484) Pfam (PF01249) | Giardia intestinalis assemblage A | |
| 23 | W (W) | SSU ribosomal protein S8P (Fragment) | polymer | 130 | 14770.3 | 1 | UniProt (V6TFI0) Pfam (PF00410) UniProt (by SIFTS) (E2RU77) | Giardia intestinalis assemblage A | |
| 24 | X (X) | SSU ribosomal protein S12P | polymer | 143 | 15897.8 | 1 | UniProt (V6T9I6) Pfam (PF00164) | Giardia intestinalis assemblage A | |
| 25 | Y (Y) | Ribosomal protein S24 | polymer | 132 | 14872.6 | 1 | UniProt (A8B593) Pfam (PF01282) | Giardia intestinalis assemblage A | |
| 26 | Z (Z) | 40S ribosomal protein S25 | polymer | 88 | 10121.1 | 1 | UniProt (A8B8H7) Pfam (PF03297) | Giardia intestinalis assemblage A | |
| 27 | AA (a) | 40S ribosomal protein S26 | polymer | 109 | 12791.0 | 1 | UniProt (A8BQZ7) Pfam (PF01283) | Giardia intestinalis assemblage A | |
| 28 | BA (b) | Ribosomal protein S27 | polymer | 124 | 14117.3 | 1 | UniProt (A8BJL1) Pfam (PF01667) UniProt (by SIFTS) (V6TC68) | Giardia intestinalis assemblage A | |
| 29 | CA (c) | Ribosomal protein S28 | polymer | 64 | 7358.6 | 1 | UniProt (A8B4F3) Pfam (PF01200) | Giardia intestinalis assemblage A | |
| 30 | DA (d) | Ribosomal protein S29A | polymer | 137 | 15499.8 | 1 | UniProt (A8B7H6) | Giardia intestinalis assemblage A | |
| 31 | EA (f) | Ribosomal protein S27a | polymer | 137 | 15134.7 | 1 | UniProt (A8BNY1) Pfam (PF01599) | Giardia intestinalis assemblage A | |
| 32 | FA (g) | E-site tRNA | polymer | 74 | 23749.1 | 1 | Giardia intestinalis assemblage A | ||
| 33 | GA (M) | Ribosomal protein S12 | polymer | 125 | 14378.7 | 1 | UniProt (A8BUG8) Pfam (PF01248) | Giardia intestinalis assemblage A | |
| 34 | HA (e) | 40S ribosomal protein S30 | polymer | 69 | 7932.4 | 1 | UniProt (A0A644F843) Pfam (PF04758) | Giardia intestinalis assemblage A | |
| 35 | IA (h) | P-site tRNA | polymer | 76 | 24535.7 | 1 | Giardia intestinalis assemblage A | ||
| 36 | JA (i) | A-site tRNA | polymer | 75 | 24117.3 | 1 | Giardia intestinalis assemblage A | ||
| 37 | KA (k) | mRNA | polymer | 9 | 2756.6 | 1 | Giardia intestinalis assemblage A | ||
| 38 | LA (2) | emetine | non-polymer | 480.6 | 1 | Chemie (YAT) | |||
| 39 | AB, BB, CB, DB, EB... (2, a) | MAGNESIUM ION | non-polymer | 24.3 | 23 | Chemie (MG) | |||
| 40 | IB (a) | ZINC ION | non-polymer | 65.4 | 1 | Chemie (ZN) | |||
| 41 | AC, BC, CC, DC, EC... (T, U, W, X, Z...) | water | water | 18.0 | 673 | Chemie (HOH) |
Sequence modifications
2: 1 - 1451 (GenBank: 2333213660)
| PDB | External Database | Details |
|---|---|---|
| C 932 | U 1478696 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 37 |
| Total formula weight | 1121598.7 | |
| Non-Polymers* | Number of molecules | 25 |
| Total formula weight | 1105.1 | |
| All* | Total formula weight | 1122703.7 |
