8FU9
Structure of Covid Spike variant deltaN25 with one erect RBD
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C | Spike glycoprotein | polymer | 1188 | 131686.0 | 3 | UniProt (P0DTC2) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601) In PDB | Severe acute respiratory syndrome coronavirus 2 | S glycoprotein,E2,Peplomer protein |
| 2 | B, C, A | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 38 | Chemie (NAG) |
Sequence modifications
A, B, C: 1 - 1188 (UniProt: P0DTC2)
| PDB | External Database | Details |
|---|---|---|
| - | Trp 64 | deletion |
| - | Phe 65 | deletion |
| - | His 66 | deletion |
| - | Ala 67 | deletion |
| - | Ile 68 | deletion |
| - | His 69 | deletion |
| - | Val 70 | deletion |
| - | Ser 71 | deletion |
| - | Gly 72 | deletion |
| - | Thr 73 | deletion |
| - | Asn 74 | deletion |
| - | Gly 75 | deletion |
| - | Thr 76 | deletion |
| - | Arg 246 | deletion |
| - | Ser 247 | deletion |
| - | Tyr 248 | deletion |
| - | Leu 249 | deletion |
| - | Thr 250 | deletion |
| - | Pro 251 | deletion |
| - | Gly 252 | deletion |
| Asn 233 | Asp 253 | engineered mutation |
| Gln 432 | Leu 452 | engineered mutation |
| Gln 451 | Glu 471 | conflict |
| Ser 470 | Phe 490 | engineered mutation |
| Asn 594 | Asp 614 | engineered mutation |
| Ser 662 | Arg 682 | conflict |
| Gly 665 | Arg 685 | conflict |
| Asn 839 | Thr 859 | engineered mutation |
| Pro 872 | Ala 892 | engineered mutation |
| Pro 922 | Ala 942 | engineered mutation |
| Pro 967 | Val 987 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 395058.1 | |
| Non-Polymers* | Number of molecules | 38 |
| Total formula weight | 8405.9 | |
| All* | Total formula weight | 403464.0 |
