8FU7
Structure of Covid Spike variant deltaN135 in fully closed form
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C | Spike glycoprotein | polymer | 1192 | 132285.8 | 3 | UniProt (P0DTC2) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601) In PDB | Severe acute respiratory syndrome coronavirus 2 | S glycoprotein,E2,Peplomer protein |
| 2 | B, A, C | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 48 | Chemie (NAG) |
Sequence modifications
A, B, C: 1 - 1188 (UniProt: P0DTC2)
| PDB | External Database | Details |
|---|---|---|
| Leu 9 | Pro 9 | conflict |
| - | Cys 136 | deletion |
| - | Asn 137 | deletion |
| - | Asp 138 | deletion |
| - | Pro 139 | deletion |
| - | Phe 140 | deletion |
| - | Leu 141 | deletion |
| - | Gly 142 | deletion |
| - | Val 143 | deletion |
| - | Tyr 144 | deletion |
| - | Trp 258 | deletion |
| - | Thr 259 | deletion |
| - | Ala 260 | deletion |
| - | Gly 261 | deletion |
| - | Ala 262 | deletion |
| - | Ala 263 | deletion |
| - | Ala 264 | deletion |
| Lys 468 | Glu 484 | conflict |
| Pro 478 | Ser 494 | conflict |
| Gly 598 | Asp 614 | conflict |
| Ser 666 | Arg 682 | conflict |
| Gly 669 | Arg 685 | conflict |
| Pro 876 | Ala 892 | engineered mutation |
| Pro 926 | Ala 942 | engineered mutation |
| Pro 971 | Val 987 | engineered mutation |
| Phe 1160 | Val 1176 | conflict |
| Lys 1189 | - | expression tag |
| Tyr 1190 | - | expression tag |
| Glu 1191 | - | expression tag |
| Gln 1192 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 396857.5 | |
| Non-Polymers* | Number of molecules | 48 |
| Total formula weight | 10618.0 | |
| All* | Total formula weight | 407475.5 |
