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8FL6

Human nuclear pre-60S ribosomal subunit (State J1)

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(BA)
60S ribosomal protein L12polymer16517847.61UniProt (P30050)
Pfam (PF03946)
Pfam (PF00298)
Homo sapiens (human)Large ribosomal subunit protein uL11
2B
(L1)
5.8S rRNApolymer15750463.81GenBank (555853)Homo sapiens (human)
3C
(L2)
ITS2 rRNApolymer1167376425.31GenBank (86475748)Homo sapiens (human)
4D
(L3)
28S rRNApolymer50701641203.81GenBank (86475748)Homo sapiens (human)
5E
(L4)
5S rRNApolymer12138998.11GenBank (23898)Homo sapiens (human)
6F
(L5)
60S ribosomal protein L11polymer17820288.51UniProt (P62913)
Pfam (PF00281)
Pfam (PF00673)
Homo sapiens (human)CLL-associated antigen KW-12,Large ribosomal subunit protein uL5
7G
(L6)
60S ribosomal protein L13polymer21124321.71UniProt (P26373)
Pfam (PF01294)
Homo sapiens (human)Breast basic conserved protein 1,Large ribosomal subunit protein eL13
8H
(L7)
60S ribosomal protein L13apolymer20323633.41UniProt (P40429)
Pfam (PF00572)
Homo sapiens (human)23 kDa highly basic protein,Large ribosomal subunit protein uL13
9I
(L8)
60S ribosomal protein L14polymer21523485.01UniProt (P50914)
Pfam (PF01929)
Homo sapiens (human)CAG-ISL 7,Large ribosomal subunit protein eL14
10J
(L9)
60S ribosomal protein L15polymer20424207.31UniProt (P61313)
Pfam (PF00827)
Homo sapiens (human)Large ribosomal subunit protein eL15
11K
(LA)
60S ribosomal protein L17polymer18421443.21UniProt (P18621)
Pfam (PF00237)
Homo sapiens (human)60S ribosomal protein L23,Large ribosomal subunit protein uL22,PD-1
12L
(LB)
60S ribosomal protein L18polymer18821687.71UniProt (Q07020)
Pfam (PF17135)
Homo sapiens (human)Large ribosomal subunit protein eL18
13M
(LC)
60S ribosomal protein L18apolymer17620808.51UniProt (Q02543)
Pfam (PF01775)
Homo sapiens (human)Large ribosomal subunit protein eL20
14N
(LD)
60S ribosomal protein L19polymer19623535.31UniProt (P84098)
Pfam (PF01280)
Homo sapiens (human)Large ribosomal subunit protein eL19
15O
(LE)
60S ribosomal protein L21polymer16018610.01UniProt (P46778)
Pfam (PF01157)
Homo sapiens (human)Large ribosomal subunit protein eL21
16P
(LF)
60S ribosomal protein L22polymer12814813.01UniProt (P35268)
Pfam (PF01776)
Homo sapiens (human)EBER-associated protein,EAP,Epstein-Barr virus small RNA-associated protein,Heparin-binding protein HBp15,Large ribosomal subunit protein eL22
17Q
(LG)
60S ribosomal protein L23polymer14014892.51UniProt (A9ZTA1)
Pfam (PF00238)
UniProt (by SIFTS) (P62829)
Homo sapiens (human)
18R
(LH)
60S ribosomal protein L23apolymer15617740.21UniProt (P62750)
Pfam (PF03939)
Pfam (PF00276)
Homo sapiens (human)Large ribosomal subunit protein uL23
19S
(LI)
60S ribosomal protein L26polymer14517303.41UniProt (P61254)
Pfam (PF16906)
Pfam (PF00467)
Homo sapiens (human)Large ribosomal subunit protein uL24
20T
(LJ)
60S ribosomal protein L27polymer13615835.81UniProt (P61353)
Pfam (PF00467)
Pfam (PF01777)
Homo sapiens (human)Large ribosomal subunit protein eL27
21U
(LK)
60S ribosomal protein L27apolymer14816604.51UniProt (P46776)
Pfam (PF00828)
Homo sapiens (human)Large ribosomal subunit protein uL15
22V
(LL)
60S ribosomal protein L28polymer13715784.61UniProt (P46779)
Pfam (PF01778)
Homo sapiens (human)Large ribosomal subunit protein eL28
23W
(LM)
60S ribosomal protein L29polymer15917804.31UniProt (P47914)
Pfam (PF01779)
Homo sapiens (human)Cell surface heparin-binding protein HIP,Large ribosomal subunit protein eL29
24X
(LN)
60S ribosomal protein L3polymer40346224.11UniProt (P39023)
Pfam (PF00297)
Homo sapiens (human)HIV-1 TAR RNA-binding protein B,TARBP-B,Large ribosomal subunit protein uL3
25Y
(LO)
60S ribosomal protein L30polymer11512805.11UniProt (P62888)
Pfam (PF01248)
Homo sapiens (human)Large ribosomal subunit protein eL30
26Z
(LP)
60S ribosomal protein L31polymer12514494.91UniProt (G7NZE1)
Pfam (PF01198)
UniProt (by SIFTS) (P62899)
Homo sapiens (human)
27AA
(LQ)
60S ribosomal protein L32polymer13515898.91UniProt (P62910)
Pfam (PF01655)
Homo sapiens (human)Large ribosomal subunit protein eL32
28BA
(LR)
60S ribosomal protein L34polymer11713326.11UniProt (P49207)
Pfam (PF01199)
Homo sapiens (human)Large ribosomal subunit protein eL34
29CA
(LS)
60S ribosomal protein L35polymer12314593.61UniProt (P42766)
Pfam (PF00831)
Homo sapiens (human)Large ribosomal subunit protein uL29
30DA
(LT)
60S ribosomal protein L35apolymer11012564.71UniProt (P18077)
Pfam (PF01247)
Homo sapiens (human)Cell growth-inhibiting gene 33 protein,Large ribosomal subunit protein eL33
31EA
(LU)
60S ribosomal protein L36polymer10512290.91UniProt (Q9Y3U8)
Pfam (PF01158)
Homo sapiens (human)Large ribosomal subunit protein eL36
32FA
(LV)
60S ribosomal protein L36apolymer10612477.01UniProt (J3KQN4)
Pfam (PF00935)
UniProt (by SIFTS) (P83881)
Homo sapiens (human)
33GA
(LW)
60S ribosomal protein L37polymer9711111.01UniProt (P61927)
Pfam (PF01907)
Homo sapiens (human)G1.16
34HA
(LX)
60S ribosomal protein L37apolymer9210299.41UniProt (P61513)
Pfam (PF01780)
Homo sapiens (human)Large ribosomal subunit protein eL43
35IA
(LY)
60S ribosomal protein L38polymer708238.91UniProt (P63173)
Pfam (PF01781)
Homo sapiens (human)
36JA
(LZ)
60S ribosomal protein L39polymer516426.81UniProt (P62891)
Pfam (PF00832)
Homo sapiens (human)
37KA
(NC)
Nucleolar GTP-binding protein 2polymer73183796.11UniProt (Q13823)
Pfam (PF08153)
Pfam (PF01926)
Homo sapiens (human)Autoantigen NGP-1
38LA
(NF)
Ribosome biogenesis protein NSA2 homologpolymer26030136.71UniProt (O95478)
Pfam (PF01201)
Homo sapiens (human)Hairy cell leukemia protein 1,TGF-beta-inducible nuclear protein 1
39MA
(NK)
Protein LLP homologpolymer12915268.41UniProt (Q9BRT6)
Pfam (PF10169)
Homo sapiens (human)Protein LAPS18-like
40NA
(NL)
Ribosome biogenesis protein NOP53polymer47854498.41UniProt (Q9NZM5)
Pfam (PF07767)
Homo sapiens (human)Glioma tumor suppressor candidate region gene 2 protein,Protein interacting with carboxyl terminus 1,PICT-1,p60
41OA
(NP)
Zinc finger protein 593polymer13415230.21UniProt (O00488)
Pfam (PF12171)
Homo sapiens (human)Zinc finger protein T86
42PA
(SA)
60S ribosomal protein L4polymer42747804.61UniProt (P36578)
Pfam (PF00573)
Pfam (PF14374)
Homo sapiens (human)60S ribosomal protein L1,Large ribosomal subunit protein uL4
43QA
(SB)
60S ribosomal protein L5polymer29734426.81UniProt (P46777)
Pfam (PF17144)
Pfam (PF14204)
Homo sapiens (human)Large ribosomal subunit protein uL18
44RA
(SC)
60S ribosomal protein L6polymer28832810.21UniProt (Q02878)
Pfam (PF03868)
Pfam (PF01159)
Homo sapiens (human)Large ribosomal subunit protein eL6,Neoplasm-related protein C140,Tax-responsive enhancer element-binding protein 107,TaxREB107
45SA
(SD)
60S ribosomal protein L7polymer24829291.01UniProt (P18124)
Pfam (PF08079)
Pfam (PF00327)
Homo sapiens (human)Large ribosomal subunit protein uL30
46TA
(SE)
60S ribosomal protein L7apolymer26630061.81UniProt (P62424)
Pfam (PF01248)
Homo sapiens (human)Large ribosomal subunit protein eL8,PLA-X polypeptide,Surfeit locus protein 3
47UA
(SF)
60S ribosomal protein L8polymer25728088.91UniProt (P62917)
Pfam (PF00181)
Pfam (PF03947)
Homo sapiens (human)Large ribosomal subunit protein uL2
48VA
(SG)
60S ribosomal protein L9polymer19221899.51UniProt (P32969)
Pfam (PF00347)
Homo sapiens (human)Large ribosomal subunit protein uL6
49WA
(SH)
MKI67 FHA domain-interacting nucleolar phosphoproteinpolymer29334285.31UniProt (Q9BYG3)
Pfam (PF00076)
Pfam (PF12196)
Homo sapiens (human)Nucleolar phosphoprotein Nopp34,Nucleolar protein interacting with the FHA domain of pKI-67,hNIFK
50XA
(SI)
60S ribosomal protein L7-like 1polymer25529730.41UniProt (Q6DKI1)
Pfam (PF08079)
Pfam (PF00327)
Homo sapiens (human)Large ribosomal subunit protein uL30-like 1
51YA
(SK)
Eukaryotic translation initiation factor 6polymer24526620.01UniProt (P56537)
Pfam (PF01912)
Homo sapiens (human)eIF-6,B(2)GCN homolog,B4 integrin interactor,CAB,p27(BBP)
52ZA
(SL)
Ribosomal L1 domain-containing protein 1polymer49055089.81UniProt (O76021)
Pfam (PF00687)
Homo sapiens (human)CATX-11,Cellular senescence-inhibited gene protein,Protein PBK1
53AB
(SM)
Pescadillo homologpolymer58868114.71UniProt (O00541)
Pfam (PF06732)
Pfam (PF16589)
Homo sapiens (human)
54BB
(SQ)
mRNA turnover protein 4 homologpolymer23927602.51UniProt (Q9UKD2)
Pfam (PF00466)
Pfam (PF17777)
Homo sapiens (human)Ribosome assembly factor MRTO4
55CB
(SR)
GTP-binding protein 4polymer63474107.81UniProt (Q9BZE4)
Pfam (PF17835)
Pfam (PF06858)
Pfam (PF08155)
Homo sapiens (human)Chronic renal failure gene protein,GTP-binding protein NGB,Nucleolar GTP-binding protein 1
56DB
(SV)
Probable ribosome biogenesis protein RLP24polymer16319666.31UniProt (Q9UHA3)
Pfam (PF01246)
Homo sapiens (human)Ribosomal L24 domain-containing protein 1,Ribosomal protein L24-like
57AC, AD, AE, BC, BD...
(L3, L1, L4, LG, LQ...)
MAGNESIUM IONnon-polymer24.388Chemie (MG)
58KE, ME, NE, OE, PE...
(LR, LV, LW, LX, NP...)
ZINC IONnon-polymer65.46Chemie (ZN)
59SE
(SR)
GUANOSINE-5'-DIPHOSPHATEnon-polymer443.21Chemie (GDP)
60TE
(SR)
POTASSIUM IONnon-polymer39.11Chemie (K)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains56
Total formula weight3427018.1
Non-Polymers*Number of molecules96
Total formula weight3013.6
All*Total formula weight3430031.7
*Water molecules are not included.

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PDB entries from 2025-06-11

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