8EWB
Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (BA) | 40S ribosomal protein S0-A | polymer | 252 | 28051.3 | 1 | UniProt (P32905) Pfam (PF00318) | Saccharomyces cerevisiae (baker's yeast) | Nucleic acid-binding protein NAB1A,Small ribosomal subunit protein uS2-A |
| 2 | B (BB) | RPS1A isoform 1 | polymer | 255 | 28798.5 | 1 | UniProt (A0A6A5PRY4) | Saccharomyces cerevisiae (baker's yeast) | |
| 3 | C (BC) | RPS2 isoform 1 | polymer | 254 | 27490.8 | 1 | UniProt (A0A6A5PWF7) | Saccharomyces cerevisiae (baker's yeast) | |
| 4 | D (BE) | 40S ribosomal protein S4-A | polymer | 261 | 29469.3 | 1 | UniProt (P0CX35) Pfam (PF08071) Pfam (PF01479) Pfam (PF00900) Pfam (PF00467) Pfam (PF16121) | Saccharomyces cerevisiae (baker's yeast) | RP5,S7,Small ribosomal subunit protein eS4-A,YS6 |
| 5 | E (BG) | 40S ribosomal protein S6-A | polymer | 236 | 27054.5 | 1 | UniProt (P0CX37) Pfam (PF01092) | Saccharomyces cerevisiae (baker's yeast) | RP9,S10,Small ribosomal subunit protein eS6-A,YS4 |
| 6 | F (BH) | 40S ribosomal protein S7-A | polymer | 190 | 21658.2 | 1 | UniProt (P26786) Pfam (PF01251) | Saccharomyces cerevisiae (baker's yeast) | RP30,RP40,Small ribosomal subunit protein eS7-A |
| 7 | G (BI) | 40S ribosomal protein S8-A | polymer | 200 | 22537.8 | 1 | UniProt (P0CX39) Pfam (PF01201) | Saccharomyces cerevisiae (baker's yeast) | RP19,S14,Small ribosomal subunit protein eS8-A,YS9 |
| 8 | H (BJ) | 40S ribosomal protein S9-A | polymer | 197 | 22487.9 | 1 | UniProt (O13516) Pfam (PF00163) Pfam (PF01479) | Saccharomyces cerevisiae (baker's yeast) | RP21,S13,Small ribosomal subunit protein uS4-A,YP28,YS11 |
| 9 | I (BL) | 40S ribosomal protein S11-A | polymer | 156 | 17785.9 | 1 | UniProt (P0CX47) Pfam (PF16205) Pfam (PF00366) | Saccharomyces cerevisiae (baker's yeast) | RP41,S18,Small ribosomal subunit protein uS17-A,YS12 |
| 10 | J (BN) | 40S ribosomal protein S13 | polymer | 151 | 17059.9 | 1 | UniProt (P05756) Pfam (PF08069) Pfam (PF00312) | Saccharomyces cerevisiae (baker's yeast) | S27a,Small ribosomal subunit protein uS15,YS15 |
| 11 | K (BO) | 40S ribosomal protein S14-A | polymer | 137 | 14562.7 | 1 | UniProt (P06367) Pfam (PF00411) | Saccharomyces cerevisiae (baker's yeast) | RP59A,Small ribosomal subunit protein uS11-A |
| 12 | L (BV) | 40S ribosomal protein S21-A | polymer | 87 | 9758.8 | 1 | UniProt (P0C0V8) Pfam (PF01249) | Saccharomyces cerevisiae (baker's yeast) | S26,Small ribosomal subunit protein eS21-A,YS25 |
| 13 | M (BW) | RPS22A isoform 1 | polymer | 130 | 14650.1 | 1 | UniProt (A0A6A5PSE9) | Saccharomyces cerevisiae (baker's yeast) | |
| 14 | N (BX) | 40S ribosomal protein S23-A | polymer | 145 | 16073.9 | 1 | UniProt (P0CX29) Pfam (PF00164) | Saccharomyces cerevisiae (baker's yeast) | RP37,S28,Small ribosomal subunit protein uS12-A,YS14 |
| 15 | O (BY) | 40S ribosomal protein S24-A | polymer | 135 | 15362.8 | 1 | UniProt (P0CX31) Pfam (PF01282) | Saccharomyces cerevisiae (baker's yeast) | RP50,Small ribosomal subunit protein eS24-A |
| 16 | P (Ba) | RPS26B isoform 1 | polymer | 119 | 13480.9 | 1 | UniProt (A0A6A5Q0E8) | Saccharomyces cerevisiae (baker's yeast) | |
| 17 | Q (Bb) | 40S ribosomal protein S27-A | polymer | 82 | 8893.4 | 1 | UniProt (P35997) Pfam (PF01667) | Saccharomyces cerevisiae (baker's yeast) | RP61,Small ribosomal subunit protein eS27-A,YS20 |
| 18 | R (Be) | 40S ribosomal protein S30-A | polymer | 63 | 7137.5 | 1 | UniProt (P0CX33) Pfam (PF04758) | Saccharomyces cerevisiae (baker's yeast) | Small ribosomal subunit protein eS30-A |
| 19 | S (BD) | RPS3 isoform 1 | polymer | 240 | 26542.8 | 1 | UniProt (A0A6A5Q3Q1) | Saccharomyces cerevisiae (baker's yeast) | |
| 20 | T (BF) | Rps5p | polymer | 225 | 25072.6 | 1 | UniProt (A0A1L4AA68) Pfam (PF00177) | Saccharomyces cerevisiae (baker's yeast) | |
| 21 | U (BK) | 40S ribosomal protein S10-A | polymer | 105 | 12757.4 | 1 | UniProt (Q08745) Pfam (PF03501) | Saccharomyces cerevisiae (baker's yeast) | Small ribosomal subunit protein eS10-A |
| 22 | V (BP) | RPS15 isoform 1 | polymer | 142 | 16031.9 | 1 | UniProt (A0A6A5Q6F2) | Saccharomyces cerevisiae (baker's yeast) | |
| 23 | W (BQ) | 40S ribosomal protein S16-A | polymer | 143 | 15877.5 | 1 | UniProt (P0CX51) Pfam (PF00380) | Saccharomyces cerevisiae (baker's yeast) | RP61R,Small ribosomal subunit protein uS9-A |
| 24 | X (BR) | 40S ribosomal protein S17-A | polymer | 136 | 15820.4 | 1 | UniProt (P02407) Pfam (PF00833) | Saccharomyces cerevisiae (baker's yeast) | RP51A,Small ribosomal subunit protein eS17-A |
| 25 | Y (BS) | 40S ribosomal protein S18-A | polymer | 146 | 17071.6 | 1 | UniProt (P0CX55) Pfam (PF00416) | Saccharomyces cerevisiae (baker's yeast) | Small ribosomal subunit protein uS13-A |
| 26 | Z (BT) | 40S ribosomal protein S19-A | polymer | 144 | 15942.1 | 1 | UniProt (P07280) Pfam (PF01090) | Saccharomyces cerevisiae (baker's yeast) | RP55A,S16a,Small ribosomal subunit protein eS19-A,YP45,YS16A |
| 27 | AA (BU) | RPS20 isoform 1 | polymer | 121 | 13929.0 | 1 | UniProt (A0A6A5PVE9) | Saccharomyces cerevisiae (baker's yeast) | |
| 28 | BA (BZ) | RPS25A isoform 1 | polymer | 108 | 12067.3 | 1 | UniProt (A0A6A5PZ18) | Saccharomyces cerevisiae (baker's yeast) | |
| 29 | CA (Bc) | RPS28A isoform 1 | polymer | 67 | 7605.8 | 1 | UniProt (A0A6A5Q700) | Saccharomyces cerevisiae (baker's yeast) | |
| 30 | DA (Bd) | RPS29A isoform 1 | polymer | 56 | 6675.7 | 1 | UniProt (A0A6A5PV92) | Saccharomyces cerevisiae (baker's yeast) | |
| 31 | EA (Bg) | Guanine nucleotide-binding protein subunit beta-like protein | polymer | 319 | 34841.2 | 1 | UniProt (P38011) Pfam (PF00400) | Saccharomyces cerevisiae (baker's yeast) | Receptor for activated C kinase,Receptor of activated protein kinase C 1,RACK1,Small ribosomal subunit protein RACK1 |
| 32 | FA (Bf) | Ubiquitin-40S ribosomal protein S31 | polymer | 152 | 17254.2 | 1 | UniProt (A0A6A5PU37) | Saccharomyces cerevisiae (baker's yeast) | |
| 33 | GA (BM) | 40S ribosomal protein S12 | polymer | 143 | 15488.6 | 1 | UniProt (A0A6A5Q8I3) | Saccharomyces cerevisiae (baker's yeast) | |
| 34 | HA (B5) | 18S rRNA | polymer | 1798 | 579649.3 | 1 | GenBank (1329886537) | Saccharomyces cerevisiae (baker's yeast) | |
| 35 | IA (AA) | 60S ribosomal protein L2-A | polymer | 254 | 27463.6 | 1 | UniProt (P0CX45) Pfam (PF00181) Pfam (PF03947) | Saccharomyces cerevisiae (baker's yeast) | L5,Large ribosomal subunit protein uL2-A,RP8,YL6 |
| 36 | JA (AB) | 60S ribosomal protein L3 | polymer | 387 | 43863.8 | 1 | UniProt (P14126) Pfam (PF00297) | Saccharomyces cerevisiae (baker's yeast) | Large ribosomal subunit protein uL3,Maintenance of killer protein 8,RP1,Trichodermin resistance protein,YL1 |
| 37 | KA (AC) | RPL4A isoform 1 | polymer | 362 | 39159.1 | 1 | UniProt (A0A6A5Q3W0) | Saccharomyces cerevisiae (baker's yeast) | |
| 38 | LA (A1) | 25S rRNA | polymer | 3360 | 1086493.1 | 1 | Saccharomyces cerevisiae | ||
| 39 | MA (A3) | 5s rRNA | polymer | 121 | 38951.1 | 1 | GenBank (1039024045) | Saccharomyces cerevisiae (baker's yeast) | |
| 40 | NA (A4) | 5.8 S rRNA | polymer | 158 | 50682.9 | 1 | GenBank (1267176496) | Saccharomyces cerevisiae (baker's yeast) | |
| 41 | OA (AD) | RPL5 isoform 1 | polymer | 297 | 33764.8 | 1 | UniProt (A0A6A5Q0W8) | Saccharomyces cerevisiae (baker's yeast) | |
| 42 | PA (AE) | 60S ribosomal protein L6-A | polymer | 176 | 20000.6 | 1 | UniProt (Q02326) Pfam (PF01159) | Saccharomyces cerevisiae (baker's yeast) | L17,Large ribosomal subunit protein eL6-A,RP18,YL16 |
| 43 | QA (AF) | 60S ribosomal protein L7-A | polymer | 244 | 27686.3 | 1 | UniProt (P05737) Pfam (PF08079) Pfam (PF00327) | Saccharomyces cerevisiae (baker's yeast) | L6,Large ribosomal subunit protein uL30-A,RP11,YL8 |
| 44 | RA (AG) | 60S ribosomal protein L8-A | polymer | 256 | 28175.8 | 1 | UniProt (P17076) Pfam (PF01248) | Saccharomyces cerevisiae (baker's yeast) | L4,L4-2,L7a-1,Large ribosomal subunit protein eL8-A,Maintenance of killer protein 7,RP6,YL5 |
| 45 | SA (AH) | 60S ribosomal protein L9-A | polymer | 191 | 21605.1 | 1 | UniProt (P05738) Pfam (PF00347) | Saccharomyces cerevisiae (baker's yeast) | L8,Large ribosomal subunit protein uL6-A,RP24,YL11 |
| 46 | TA (AI) | RPL10 isoform 1 | polymer | 221 | 25410.5 | 1 | UniProt (A0A6A5PUZ5) | Saccharomyces cerevisiae (baker's yeast) | |
| 47 | UA (AJ) | RPL11A isoform 1 | polymer | 174 | 19755.7 | 1 | UniProt (A0A6A5Q7I9) | Saccharomyces cerevisiae (baker's yeast) | |
| 48 | VA (AL) | 60S ribosomal protein L13-A | polymer | 199 | 22604.2 | 1 | UniProt (Q12690) Pfam (PF01294) | Saccharomyces cerevisiae (baker's yeast) | Large ribosomal subunit protein eL13-A |
| 49 | WA (AM) | 60S ribosomal protein L14-A | polymer | 138 | 15195.1 | 1 | UniProt (P36105) Pfam (PF00467) Pfam (PF01929) | Saccharomyces cerevisiae (baker's yeast) | Large ribosomal subunit protein eL14-A |
| 50 | XA (AN) | 60S ribosomal protein L15-A | polymer | 204 | 24482.4 | 1 | UniProt (P05748) Pfam (PF00827) | Saccharomyces cerevisiae (baker's yeast) | L13,Large ribosomal subunit protein eL15-A,RP15R,YL10,YP18 |
| 51 | YA (AO) | 60S ribosomal protein L16-A | polymer | 199 | 22247.2 | 1 | UniProt (P26784) Pfam (PF00572) | Saccharomyces cerevisiae (baker's yeast) | L13a,L21,Large ribosomal subunit protein uL13-A,RP22,YL15 |
| 52 | ZA (AP) | 60S ribosomal protein L17-A | polymer | 184 | 20589.5 | 1 | UniProt (P05740) Pfam (PF00237) | Saccharomyces cerevisiae (baker's yeast) | L20A,Large ribosomal subunit protein uL22-A,YL17 |
| 53 | AB (AQ) | 60S ribosomal protein L18-A | polymer | 186 | 20609.3 | 1 | UniProt (P0CX49) Pfam (PF17135) | Saccharomyces cerevisiae (baker's yeast) | Large ribosomal subunit protein eL18-A,RP28 |
| 54 | BB (AR) | 60S ribosomal protein L19-A | polymer | 189 | 21762.3 | 1 | UniProt (P0CX82) Pfam (PF01280) | Saccharomyces cerevisiae (baker's yeast) | L23,Large ribosomal subunit protein eL19-A,RP15L,RP33,YL14 |
| 55 | CB (AS) | 60S ribosomal protein L20 | polymer | 178 | 21279.9 | 1 | UniProt (B3LMD0) Pfam (PF01775) | Saccharomyces cerevisiae (baker's yeast) | |
| 56 | DB (AT) | 60S ribosomal protein L21-A | polymer | 160 | 18279.3 | 1 | UniProt (Q02753) Pfam (PF01157) | Saccharomyces cerevisiae (baker's yeast) | Large ribosomal subunit protein eL21-A |
| 57 | EB (AU) | 60S ribosomal protein L22-A | polymer | 121 | 13711.4 | 1 | UniProt (P05749) Pfam (PF01776) | Saccharomyces cerevisiae (baker's yeast) | L1c,Large ribosomal subunit protein eL22-A,RP4,YL31 |
| 58 | FB (AV) | 60S ribosomal protein L23-A | polymer | 137 | 14494.0 | 1 | UniProt (P0CX41) Pfam (PF00238) | Saccharomyces cerevisiae (baker's yeast) | L17a,Large ribosomal subunit protein uL14-A,YL32 |
| 59 | GB (AW) | RPL24A isoform 1 | polymer | 155 | 17661.7 | 1 | UniProt (A0A6A5PY83) | Saccharomyces cerevisiae (baker's yeast) | |
| 60 | HB (AX) | 60S ribosomal protein L25 | polymer | 142 | 15787.6 | 1 | UniProt (P04456) Pfam (PF03939) Pfam (PF00276) | Saccharomyces cerevisiae (baker's yeast) | Large ribosomal subunit protein uL23,RP16L,YL25,YP42' |
| 61 | IB (AY) | 60S ribosomal protein L26-A | polymer | 127 | 14265.8 | 1 | UniProt (P05743) Pfam (PF16906) Pfam (PF00467) | Saccharomyces cerevisiae (baker's yeast) | L33,Large ribosomal subunit protein uL24-A,YL33 |
| 62 | JB (AZ) | 60S ribosomal protein L27-A | polymer | 136 | 15568.4 | 1 | UniProt (P0C2H6) Pfam (PF01777) | Saccharomyces cerevisiae (baker's yeast) | Large ribosomal subunit protein eL27-A |
| 63 | KB (Aa) | 60S ribosomal protein L28 | polymer | 149 | 16761.7 | 1 | UniProt (P02406) Pfam (PF00828) | Saccharomyces cerevisiae (baker's yeast) | L27a,L29,Large ribosomal subunit protein uL15,RP44,RP62,YL24 |
| 64 | LB (Ab) | RPL29 isoform 1 | polymer | 59 | 6691.9 | 1 | UniProt (A0A6A5PWR1) | Saccharomyces cerevisiae (baker's yeast) | |
| 65 | MB (Ac) | 60S ribosomal protein L30 | polymer | 105 | 11430.4 | 1 | UniProt (P14120) Pfam (PF01248) | Saccharomyces cerevisiae (baker's yeast) | L32,Large ribosomal subunit protein eL30,RP73,YL38 |
| 66 | NB (Ad) | 60S ribosomal protein L31-A | polymer | 113 | 12980.2 | 1 | UniProt (P0C2H8) Pfam (PF01198) | Saccharomyces cerevisiae (baker's yeast) | L34,Large ribosomal subunit protein eL31-A,YL28 |
| 67 | OB (Ae) | RPL32 isoform 1 | polymer | 130 | 14809.4 | 1 | UniProt (A0A6A5Q1M9) | Saccharomyces cerevisiae (baker's yeast) | |
| 68 | PB (Af) | 60S ribosomal protein L33-A | polymer | 107 | 12177.1 | 1 | UniProt (P05744) Pfam (PF01247) | Saccharomyces cerevisiae (baker's yeast) | L37,Large ribosomal subunit protein eL33-A,RP47,YL37 |
| 69 | QB (Ag) | 60S ribosomal protein L34-A | polymer | 121 | 13673.2 | 1 | UniProt (P87262) Pfam (PF01199) | Saccharomyces cerevisiae (baker's yeast) | Large ribosomal subunit protein eL34-A |
| 70 | RB (Ah) | 60S ribosomal protein L35-A | polymer | 120 | 13942.6 | 1 | UniProt (P0CX84) Pfam (PF00831) | Saccharomyces cerevisiae (baker's yeast) | Large ribosomal subunit protein uL29-A |
| 71 | SB (Ai) | 60S ribosomal protein L36-A | polymer | 100 | 11151.3 | 1 | UniProt (P05745) Pfam (PF01158) | Saccharomyces cerevisiae (baker's yeast) | L39,Large ribosomal subunit protein eL36-A,YL39 |
| 72 | TB (Aj) | 60S ribosomal protein L37-A | polymer | 88 | 9877.4 | 1 | UniProt (P49166) Pfam (PF01907) | Saccharomyces cerevisiae (baker's yeast) | L43,Large ribosomal subunit protein eL37-A,YL35,YP55 |
| 73 | UB (Ak) | RPL38 isoform 1 | polymer | 78 | 8845.6 | 1 | UniProt (A0A6A5PUL8) | Saccharomyces cerevisiae (baker's yeast) | |
| 74 | VB (Al) | 60S ribosomal protein L39 | polymer | 51 | 6358.6 | 1 | UniProt (P04650) Pfam (PF00832) | Saccharomyces cerevisiae (baker's yeast) | L46,Large ribosomal subunit protein eL39,YL40 |
| 75 | WB (Am) | Ubiquitin-60S ribosomal protein L40 | polymer | 128 | 14583.1 | 1 | UniProt (P0CH08) Pfam (PF00240) Pfam (PF01020) | Saccharomyces cerevisiae (baker's yeast) | |
| 76 | XB (An) | 60S ribosomal protein L41-A | polymer | 25 | 3354.2 | 1 | UniProt (P0CX86) Pfam (PF05162) | Saccharomyces cerevisiae (baker's yeast) | L47,Large ribosomal subunit protein eL41-A,YL41 |
| 77 | YB (Ao) | 60S ribosomal protein L42-A | polymer | 106 | 12246.7 | 1 | UniProt (P0CX27) Pfam (PF00935) | Saccharomyces cerevisiae (baker's yeast) | L41,Large ribosomal subunit protein eL42-A,YL27,YP44 |
| 78 | ZB (Ap) | 60S ribosomal protein L43-A | polymer | 92 | 10113.0 | 1 | UniProt (P0CX25) Pfam (PF01780) | Saccharomyces cerevisiae (baker's yeast) | L37a,Large ribosomal subunit protein eL43-A,YL35 |
| 79 | AC (E) | RPL1A isoform 1 | polymer | 217 | 24524.8 | 1 | UniProt (A0A6A5Q2N7) | Saccharomyces cerevisiae (baker's yeast) | RPL1B isoform 1 |
| 80 | BC (DC) | Elongation factor 2 | polymer | 842 | 93549.3 | 1 | UniProt (P32324) Pfam (PF00009) Pfam (PF03144) Pfam (PF14492) Pfam (PF03764) Pfam (PF00679) | Saccharomyces cerevisiae (baker's yeast) | EF-2,Eukaryotic elongation factor 2,eEF2,Ribosomal translocase,Translation elongation factor 2 |
| 81 | CC (V) | 60S acidic ribosomal protein P0 | polymer | 312 | 33749.1 | 1 | UniProt (P05317) Pfam (PF00466) Pfam (PF17777) Pfam (PF00428) | Saccharomyces cerevisiae (baker's yeast) | A0,L10e,Large ribosomal subunit protein uL10 |
| 82 | DC (EC) | Taura syndrome virus (TSV) internal ribosome entry site (IRES) RNA | polymer | 202 | 64957.5 | 1 | GenBank (14701764) | Taura syndrome virus | |
| 83 | AD, AE, AF, AG, AH... (B5, A1, Ba, A3, A4...) | MAGNESIUM ION | non-polymer | 24.3 | 242 | Chemie (MG) | |||
| 84 | ML (Ao) | ZINC ION | non-polymer | 65.4 | 1 | Chemie (ZN) | |||
| 85 | NL (DC) | GUANOSINE-5'-DIPHOSPHATE | non-polymer | 443.2 | 1 | Chemie (GDP) |
Sequence modifications
B5: 1 - 1799 (GenBank: 1329886537)
EC: 6758 - 6952 (GenBank: 14701764)
| PDB | External Database | Details |
|---|---|---|
| B8n 1191 | U 468965 | conflict |
| 4ac 1280 | C 468876 | conflict |
| 4ac 1773 | C 468383 | conflict |
| PDB | External Database | Details |
|---|---|---|
| U 6953 | - | expression tag |
| A 6954 | - | expression tag |
| A 6955 | - | expression tag |
| A 6956 | - | expression tag |
| A 6957 | - | expression tag |
| C 6958 | - | expression tag |
| C 6959 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 82 |
| Total formula weight | 3312269.2 | |
| Non-Polymers* | Number of molecules | 244 |
| Total formula weight | 6390.4 | |
| All* | Total formula weight | 3318659.6 |
