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8EUG

Ytm1 associated nascent 60S ribosome State 3

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(1)
RNA (2863-MER)polymer34981129828.31GenBank (157310483)Schizosaccharomyces pombe (fission yeast)
2B
(2)
RNA (152-MER)polymer16552880.21GenBank (288694)Schizosaccharomyces pombe (fission yeast)
3C
(3)
Protein mak16polymer30235686.91UniProt (Q9UTE6)
Pfam (PF01778)
Pfam (PF04874)
Schizosaccharomyces pombe (fission yeast)
4D
(8)
60S ribosomal protein L39polymer516326.51UniProt (P05767)
Pfam (PF00832)
Schizosaccharomyces pombe (fission yeast)YL36
5E
(9)
RNA (118-MER)polymer22973038.81GenBank (173455)Schizosaccharomyces pombe (fission yeast)
6F
(A)
60S ribosomal protein L2-Apolymer25327151.21UniProt (P0CT70)
Pfam (PF00181)
Pfam (PF03947)
Schizosaccharomyces pombe (fission yeast)K37,K5,KD4
7G
(B)
60S ribosomal protein L3-Apolymer38843889.81UniProt (P40372)
Pfam (PF00297)
Schizosaccharomyces pombe (fission yeast)
8H
(C)
60S ribosomal protein L4-Bpolymer36339982.31UniProt (Q9P784)
Pfam (PF00573)
Pfam (PF14374)
Schizosaccharomyces pombe (fission yeast)
9I
(D)
60S ribosomal protein L5-Apolymer29433513.91UniProt (P52822)
Pfam (PF14204)
Pfam (PF17144)
Schizosaccharomyces pombe (fission yeast)
10J
(E)
60S ribosomal protein L6polymer19521286.01UniProt (P79071)
Pfam (PF01159)
Schizosaccharomyces pombe (fission yeast)
11K
(F)
60S ribosomal protein L7-Bpolymer25028499.31UniProt (P25457)
Pfam (PF08079)
Pfam (PF00327)
Schizosaccharomyces pombe (fission yeast)
12L
(G)
60S ribosomal protein L8polymer25928659.81UniProt (O13672)
Pfam (PF01248)
Schizosaccharomyces pombe (fission yeast)L4,L7A
13M
(H)
60S ribosomal protein L9-Apolymer19021545.01UniProt (Q10232)
Pfam (PF00347)
Schizosaccharomyces pombe (fission yeast)
14N
(I)
60S ribosomal protein L10-Apolymer22125421.61UniProt (Q09127)
Pfam (PF00252)
Schizosaccharomyces pombe (fission yeast)QM protein homolog,SpQM
15O
(J)
60S ribosomal protein L11-Apolymer17419928.21UniProt (P0CT77)
Pfam (PF00281)
Pfam (PF00673)
Schizosaccharomyces pombe (fission yeast)
16P
(K)
60S ribosomal protein L43-Apolymer9410444.31UniProt (Q9HGL8)
Pfam (PF01780)
Schizosaccharomyces pombe (fission yeast)L37A
17Q
(L)
60S ribosomal protein L13polymer20823578.11UniProt (O74175)
Pfam (PF01294)
Schizosaccharomyces pombe (fission yeast)
18R
(M)
60S ribosomal protein L14polymer13415241.11UniProt (O94238)
Pfam (PF00467)
Pfam (PF01929)
Schizosaccharomyces pombe (fission yeast)
19S
(N)
60S ribosomal protein L15-Apolymer20123862.61UniProt (O74895)
Pfam (PF00827)
Schizosaccharomyces pombe (fission yeast)
20T
(O)
60S ribosomal protein L16-Bpolymer19722215.31UniProt (O42991)
Pfam (PF00572)
Schizosaccharomyces pombe (fission yeast)
21U
(P)
60S ribosomal protein L17-Apolymer18720854.11UniProt (O14339)
Pfam (PF00237)
Schizosaccharomyces pombe (fission yeast)
22V
(Q)
60S ribosomal protein L18-Apolymer18721240.91UniProt (Q10192)
Pfam (PF17135)
Schizosaccharomyces pombe (fission yeast)
23W
(R)
60S ribosomal protein L19-Apolymer19322783.81UniProt (P05734)
Pfam (PF01280)
Pfam (PF25476)
Schizosaccharomyces pombe (fission yeast)YL15
24X
(S)
60S ribosomal protein L20-Apolymer17620642.31UniProt (P0CT68)
Pfam (PF01775)
Schizosaccharomyces pombe (fission yeast)YL17
25Y
(T)
60S ribosomal protein L21-Apolymer16018418.21UniProt (Q9UUC1)
Pfam (PF01157)
Schizosaccharomyces pombe (fission yeast)
26Z
(U)
60S ribosomal protein L22polymer11713344.41UniProt (Q09668)
Pfam (PF01776)
Schizosaccharomyces pombe (fission yeast)
27AA
(V)
60S ribosomal protein L23-Apolymer13914905.51UniProt (P0CT60)
Pfam (PF00238)
Schizosaccharomyces pombe (fission yeast)
28BA
(X)
60S ribosomal protein L25-Apolymer14115870.71UniProt (Q10330)
Pfam (PF03939)
Pfam (PF00276)
Schizosaccharomyces pombe (fission yeast)
29CA
(Y)
60S ribosomal protein L26polymer12614375.91UniProt (P78946)
Pfam (PF16906)
Pfam (PF00467)
Schizosaccharomyces pombe (fission yeast)
30DA
(Z)
60S ribosomal protein L27-Apolymer13615421.31UniProt (O14388)
Pfam (PF00467)
Pfam (PF01777)
Schizosaccharomyces pombe (fission yeast)
31EA
(a)
60S ribosomal protein L28-Apolymer14816691.51UniProt (P36585)
Pfam (PF00828)
Schizosaccharomyces pombe (fission yeast)L27A,L29
32FA
(b)
60S ribosomal protein L29polymer617224.21UniProt (Q92366)
Pfam (PF01779)
Schizosaccharomyces pombe (fission yeast)L43
33GA
(c)
60S ribosomal protein L30-2polymer11712261.41UniProt (Q9UTP0)
Pfam (PF01248)
Schizosaccharomyces pombe (fission yeast)
34HA
(d)
60S ribosomal protein L31polymer11313290.51UniProt (Q9URX6)
Pfam (PF01198)
Schizosaccharomyces pombe (fission yeast)
35IA
(e)
60S ribosomal protein L32-Apolymer12714491.11UniProt (P79015)
Pfam (PF01655)
Schizosaccharomyces pombe (fission yeast)
36JA
(f)
60S ribosomal protein L33-Bpolymer10812133.21UniProt (Q9USG6)
Pfam (PF01247)
Schizosaccharomyces pombe (fission yeast)L37B
37KA
(g)
60S ribosomal protein L34-Apolymer11212898.21UniProt (O42846)
Pfam (PF01199)
Schizosaccharomyces pombe (fission yeast)
38LA
(h)
60S ribosomal protein L35polymer12214333.91UniProt (O74904)
Pfam (PF00831)
Schizosaccharomyces pombe (fission yeast)
39MA
(i)
60S ribosomal protein L36-Bpolymer9911287.41UniProt (O94658)
Pfam (PF01158)
Schizosaccharomyces pombe (fission yeast)
40NA
(j)
60S ribosomal protein L37-Bpolymer9110112.81UniProt (P05733)
Pfam (PF01907)
Schizosaccharomyces pombe (fission yeast)L37-2,YL27
41OA
(k)
60S ribosomal protein L38-1polymer748511.11UniProt (Q9USR7)
Pfam (PF01781)
Schizosaccharomyces pombe (fission yeast)
42PA
(m)
Ribosome biogenesis protein erb1polymer74083052.51UniProt (O74399)
Pfam (PF08145)
Pfam (PF00400)
Schizosaccharomyces pombe (fission yeast)Eukaryotic ribosome biogenesis protein 1
43QA
(n)
Pescadillo homologpolymer60769294.21UniProt (O60164)
Pfam (PF06732)
Schizosaccharomyces pombe (fission yeast)Nucleolar protein 7 homolog
44RA
(o)
60S ribosomal protein L42polymer10612239.61UniProt (Q9UTI8)
Pfam (PF00935)
Schizosaccharomyces pombe (fission yeast)
45SA
(p)
Ribosome biogenesis protein ytm1polymer44048388.11UniProt (Q9URY0)
Pfam (PF08154)
Pfam (PF00400)
Schizosaccharomyces pombe (fission yeast)
46TA
(u)
Ribosome biogenesis protein rlp24polymer19222323.91UniProt (Q10353)
Pfam (PF01246)
Schizosaccharomyces pombe (fission yeast)
47UA
(j)
ZINC IONnon-polymer65.41Chemie (ZN)
Sequence modifications
1: 1 - 3498 (GenBank: 157310483)
PDBExternal DatabaseDetails
C 1746U 7796conflict
U 2185C 7357conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains46
Total formula weight2229370.1
Non-Polymers*Number of molecules1
Total formula weight65.4
All*Total formula weight2229435.5
*Water molecules are not included.

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PDB entries from 2026-02-04

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