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8EUG

Ytm1 associated nascent 60S ribosome State 3

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
11RNA (2863-MER)polymer34981129828.31GenBank (157310483)Schizosaccharomyces pombe (fission yeast)
22RNA (152-MER)polymer16552880.21GenBank (288694)Schizosaccharomyces pombe (fission yeast)
33Protein mak16polymer30235686.91UniProt (Q9UTE6)
Pfam (PF01778)
Pfam (PF04874)
In PDB
Schizosaccharomyces pombe (fission yeast)
4860S ribosomal protein L39polymer516326.51UniProt (P05767)
Pfam (PF00832)
In PDB
Schizosaccharomyces pombe (fission yeast)YL36
59RNA (118-MER)polymer22973038.81GenBank (173455)Schizosaccharomyces pombe (fission yeast)
6A60S ribosomal protein L2-Apolymer25327151.21UniProt (P0CT70)
Pfam (PF00181)
Pfam (PF03947)
In PDB
Schizosaccharomyces pombe (fission yeast)K37,K5,KD4
7B60S ribosomal protein L3-Apolymer38843889.81UniProt (P40372)
Pfam (PF00297)
In PDB
Schizosaccharomyces pombe (fission yeast)
8C60S ribosomal protein L4-Bpolymer36339982.31UniProt (Q9P784)
Pfam (PF00573)
Pfam (PF14374)
In PDB
Schizosaccharomyces pombe (fission yeast)
9D60S ribosomal protein L5-Apolymer29433513.91UniProt (P52822)
Pfam (PF14204)
Pfam (PF17144)
In PDB
Schizosaccharomyces pombe (fission yeast)
10E60S ribosomal protein L6polymer19521286.01UniProt (P79071)
Pfam (PF01159)
In PDB
Schizosaccharomyces pombe (fission yeast)
11F60S ribosomal protein L7-Bpolymer25028499.31UniProt (P25457)
Pfam (PF08079)
Pfam (PF00327)
In PDB
Schizosaccharomyces pombe (fission yeast)
12G60S ribosomal protein L8polymer25928659.81UniProt (O13672)
Pfam (PF01248)
In PDB
Schizosaccharomyces pombe (fission yeast)L4,L7A
13H60S ribosomal protein L9-Apolymer19021545.01UniProt (Q10232)
Pfam (PF00347)
In PDB
Schizosaccharomyces pombe (fission yeast)
14I60S ribosomal protein L10-Apolymer22125421.61UniProt (Q09127)
Pfam (PF00252)
In PDB
Schizosaccharomyces pombe (fission yeast)QM protein homolog,SpQM
15J60S ribosomal protein L11-Apolymer17419928.21UniProt (P0CT77)
Pfam (PF00281)
Pfam (PF00673)
In PDB
Schizosaccharomyces pombe (fission yeast)
16K60S ribosomal protein L43-Apolymer9410444.31UniProt (Q9HGL8)
Pfam (PF01780)
In PDB
Schizosaccharomyces pombe (fission yeast)L37A
17L60S ribosomal protein L13polymer20823578.11UniProt (O74175)
Pfam (PF01294)
In PDB
Schizosaccharomyces pombe (fission yeast)
18M60S ribosomal protein L14polymer13415241.11UniProt (O94238)
Pfam (PF00467)
Pfam (PF01929)
In PDB
Schizosaccharomyces pombe (fission yeast)
19N60S ribosomal protein L15-Apolymer20123862.61UniProt (O74895)
Pfam (PF00827)
In PDB
Schizosaccharomyces pombe (fission yeast)
20O60S ribosomal protein L16-Bpolymer19722215.31UniProt (O42991)
Pfam (PF00572)
In PDB
Schizosaccharomyces pombe (fission yeast)
21P60S ribosomal protein L17-Apolymer18720854.11UniProt (O14339)
Pfam (PF00237)
In PDB
Schizosaccharomyces pombe (fission yeast)
22Q60S ribosomal protein L18-Apolymer18721240.91UniProt (Q10192)
Pfam (PF17135)
In PDB
Schizosaccharomyces pombe (fission yeast)
23R60S ribosomal protein L19-Apolymer19322783.81UniProt (P05734)
Pfam (PF01280)
In PDB
Schizosaccharomyces pombe (fission yeast)YL15
24S60S ribosomal protein L20-Apolymer17620642.31UniProt (P0CT68)
Pfam (PF01775)
In PDB
Schizosaccharomyces pombe (fission yeast)YL17
25T60S ribosomal protein L21-Apolymer16018418.21UniProt (Q9UUC1)
Pfam (PF01157)
In PDB
Schizosaccharomyces pombe (fission yeast)
26U60S ribosomal protein L22polymer11713344.41UniProt (Q09668)
Pfam (PF01776)
In PDB
Schizosaccharomyces pombe (fission yeast)
27V60S ribosomal protein L23-Apolymer13914905.51UniProt (P0CT60)
Pfam (PF00238)
In PDB
Schizosaccharomyces pombe (fission yeast)
28X60S ribosomal protein L25-Apolymer14115870.71UniProt (Q10330)
Pfam (PF03939)
Pfam (PF00276)
In PDB
Schizosaccharomyces pombe (fission yeast)
29Y60S ribosomal protein L26polymer12614375.91UniProt (P78946)
Pfam (PF16906)
Pfam (PF00467)
In PDB
Schizosaccharomyces pombe (fission yeast)
30Z60S ribosomal protein L27-Apolymer13615421.31UniProt (O14388)
Pfam (PF00467)
Pfam (PF01777)
In PDB
Schizosaccharomyces pombe (fission yeast)
31a60S ribosomal protein L28-Apolymer14816691.51UniProt (P36585)
Pfam (PF00828)
In PDB
Schizosaccharomyces pombe (fission yeast)L27A,L29
32b60S ribosomal protein L29polymer617224.21UniProt (Q92366)
Pfam (PF01779)
In PDB
Schizosaccharomyces pombe (fission yeast)L43
33c60S ribosomal protein L30-2polymer11712261.41UniProt (Q9UTP0)
Pfam (PF01248)
In PDB
Schizosaccharomyces pombe (fission yeast)
34d60S ribosomal protein L31polymer11313290.51UniProt (Q9URX6)
Pfam (PF01198)
In PDB
Schizosaccharomyces pombe (fission yeast)
35e60S ribosomal protein L32-Apolymer12714491.11UniProt (P79015)
Pfam (PF01655)
In PDB
Schizosaccharomyces pombe (fission yeast)
36f60S ribosomal protein L33-Bpolymer10812133.21UniProt (Q9USG6)
Pfam (PF01247)
In PDB
Schizosaccharomyces pombe (fission yeast)L37B
37g60S ribosomal protein L34-Apolymer11212898.21UniProt (O42846)
Pfam (PF01199)
In PDB
Schizosaccharomyces pombe (fission yeast)
38h60S ribosomal protein L35polymer12214333.91UniProt (O74904)
Pfam (PF00831)
In PDB
Schizosaccharomyces pombe (fission yeast)
39i60S ribosomal protein L36-Bpolymer9911287.41UniProt (O94658)
Pfam (PF01158)
In PDB
Schizosaccharomyces pombe (fission yeast)
40j60S ribosomal protein L37-Bpolymer9110112.81UniProt (P05733)
Pfam (PF01907)
In PDB
Schizosaccharomyces pombe (fission yeast)L37-2,YL27
41k60S ribosomal protein L38-1polymer748511.11UniProt (Q9USR7)
Pfam (PF01781)
In PDB
Schizosaccharomyces pombe (fission yeast)
42mRibosome biogenesis protein erb1polymer74083052.51UniProt (O74399)
Pfam (PF08145)
Pfam (PF00400)
In PDB
Schizosaccharomyces pombe (fission yeast)Eukaryotic ribosome biogenesis protein 1
43nPescadillo homologpolymer60769294.21UniProt (O60164)
Pfam (PF06732)
In PDB
Schizosaccharomyces pombe (fission yeast)Nucleolar protein 7 homolog
44o60S ribosomal protein L42polymer10612239.61UniProt (Q9UTI8)
Pfam (PF00935)
In PDB
Schizosaccharomyces pombe (fission yeast)
45pRibosome biogenesis protein ytm1polymer44048388.11UniProt (Q9URY0)
Pfam (PF08154)
Pfam (PF00400)
In PDB
Schizosaccharomyces pombe (fission yeast)
46uRibosome biogenesis protein rlp24polymer19222323.91UniProt (Q10353)
Pfam (PF01246)
In PDB
Schizosaccharomyces pombe (fission yeast)
47jZINC IONnon-polymer65.41Chemie (ZN)
Sequence modifications
1: 1 - 3498 (GenBank: 157310483)
PDBExternal DatabaseDetails
C 1746U 7796conflict
U 2185C 7357conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains46
Total formula weight2229370.1
Non-Polymers*Number of molecules1
Total formula weight65.4
All*Total formula weight2229435.5
*Water molecules are not included.

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PDB entries from 2024-07-10

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