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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

8ETJ

Fkbp39 associated 60S nascent ribosome State 2

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
11RNA (1758-MER)polymer34971129508.01GenBank (157310483)Schizosaccharomyces pombe (fission yeast)
22RNA (144-MER)polymer16552880.21GenBank (288694)Schizosaccharomyces pombe (fission yeast)
33Protein mak16polymer30235686.91UniProt (Q9UTE6)
Pfam (PF01778)
Pfam (PF04874)
In PDB		Schizosaccharomyces pombe (fission yeast)
4B60S ribosomal protein L3-Apolymer38843889.81UniProt (P40372)
Pfam (PF00297)
In PDB		Schizosaccharomyces pombe (fission yeast)
5C60S ribosomal protein L4-Bpolymer36339982.31UniProt (Q9P784)
Pfam (PF00573)
Pfam (PF14374)
In PDB		Schizosaccharomyces pombe (fission yeast)
6E60S ribosomal protein L6polymer19521286.01UniProt (P79071)
Pfam (PF01159)
In PDB		Schizosaccharomyces pombe (fission yeast)
7F60S ribosomal protein L7-Bpolymer25028499.31UniProt (P25457)
Pfam (PF08079)
Pfam (PF00327)
In PDB		Schizosaccharomyces pombe (fission yeast)
8G60S ribosomal protein L8polymer25928659.81UniProt (O13672)
Pfam (PF01248)
In PDB		Schizosaccharomyces pombe (fission yeast)L4,L7A
9H60S ribosomal protein L9-Apolymer19021545.01UniProt (Q10232)
Pfam (PF00347)
In PDB		Schizosaccharomyces pombe (fission yeast)
10L60S ribosomal protein L13polymer20823578.11UniProt (O74175)
Pfam (PF01294)
In PDB		Schizosaccharomyces pombe (fission yeast)
11M60S ribosomal protein L14polymer13415241.11UniProt (O94238)
Pfam (PF00467)
Pfam (PF01929)
In PDB		Schizosaccharomyces pombe (fission yeast)
12N60S ribosomal protein L15-Apolymer20123862.61UniProt (O74895)
Pfam (PF00827)
In PDB		Schizosaccharomyces pombe (fission yeast)
13O60S ribosomal protein L16-Bpolymer19722215.31UniProt (O42991)
Pfam (PF00572)
In PDB		Schizosaccharomyces pombe (fission yeast)
14P60S ribosomal protein L17-Apolymer18720854.11UniProt (O14339)
Pfam (PF00237)
In PDB		Schizosaccharomyces pombe (fission yeast)
15Q60S ribosomal protein L18-Apolymer18721240.91UniProt (Q10192)
Pfam (PF17135)
In PDB		Schizosaccharomyces pombe (fission yeast)
16R60S ribosomal protein L19-Apolymer19322783.81UniProt (P05734)
Pfam (PF01280)
In PDB		Schizosaccharomyces pombe (fission yeast)YL15
17S60S ribosomal protein L20-Apolymer17620642.31UniProt (P0CT68)
Pfam (PF01775)
In PDB		Schizosaccharomyces pombe (fission yeast)YL17
18V60S ribosomal protein L23-Apolymer13914905.51UniProt (P0CT60)
Pfam (PF00238)
In PDB		Schizosaccharomyces pombe (fission yeast)
19WRibosome assembly factor mrt4polymer24126698.71UniProt (Q9USZ6)
Pfam (PF00466)
Pfam (PF17777)
In PDB		Schizosaccharomyces pombe (fission yeast)mRNA turnover protein 4
20Y60S ribosomal protein L26polymer12614375.91UniProt (P78946)
Pfam (PF16906)
Pfam (PF00467)
In PDB		Schizosaccharomyces pombe (fission yeast)
21a60S ribosomal protein L28-Apolymer14816691.51UniProt (P36585)
Pfam (PF00828)
In PDB		Schizosaccharomyces pombe (fission yeast)L27A,L29
22bProbable nucleolar GTP-binding protein 1polymer64272915.41UniProt (O94659)
Pfam (PF17835)
Pfam (PF06858)
Pfam (PF08155)
In PDB		Schizosaccharomyces pombe (fission yeast)
23d60S ribosomal protein L31polymer11313290.51UniProt (Q9URX6)
Pfam (PF01198)
In PDB		Schizosaccharomyces pombe (fission yeast)
24e60S ribosomal protein L32-Apolymer12714491.11UniProt (P79015)
Pfam (PF01655)
In PDB		Schizosaccharomyces pombe (fission yeast)
25f60S ribosomal protein L33-Bpolymer10812133.21UniProt (Q9USG6)
Pfam (PF01247)
In PDB		Schizosaccharomyces pombe (fission yeast)L37B
26h60S ribosomal protein L35polymer12214333.91UniProt (O74904)
Pfam (PF00831)
In PDB		Schizosaccharomyces pombe (fission yeast)
27i60S ribosomal protein L36-Bpolymer9911287.41UniProt (O94658)
Pfam (PF01158)
In PDB		Schizosaccharomyces pombe (fission yeast)
28j60S ribosomal protein L37-Bpolymer9110112.81UniProt (P05733)
Pfam (PF01907)
In PDB		Schizosaccharomyces pombe (fission yeast)L37-2,YL27
29rRibosome biogenesis protein nsa2polymer26029765.51UniProt (Q9UU79)
Pfam (PF01201)
In PDB		Schizosaccharomyces pombe (fission yeast)
30sGTPase grn1polymer47052510.41UniProt (O74791)
Pfam (PF08701)
Pfam (PF01926)
In PDB		Schizosaccharomyces pombe (fission yeast)GTPase in ribosomal export from the nucleolus protein 1,Nuclear GTP-binding protein grn1
31uRibosome biogenesis protein rlp24polymer19222323.91UniProt (Q10353)
Pfam (PF01246)
In PDB		Schizosaccharomyces pombe (fission yeast)
32wAdoMet-dependent rRNA methyltransferase spb1polymer80291055.21UniProt (O42832)
Pfam (PF01728)
Pfam (PF11861)
Pfam (PF07780)
In PDB		Schizosaccharomyces pombe (fission yeast)2'-O-ribose RNA methyltransferase,S-adenosyl-L-methionine-dependent methyltransferase
33yEukaryotic translation initiation factor 6polymer24426251.41UniProt (O94476)
Pfam (PF01912)
In PDB		Schizosaccharomyces pombe (fission yeast)eIF-6
34zUPF0642 protein C32H8.05polymer11713328.21UniProt (Q96WW3)
Pfam (PF10338)
In PDB		Schizosaccharomyces pombe (fission yeast)
35T60S ribosomal protein L21-Apolymer16018418.21UniProt (Q9UUC1)
Pfam (PF01157)
In PDB		Schizosaccharomyces pombe (fission yeast)
36jZINC IONnon-polymer65.41Chemie (ZN)
Sequence modifications
1: 1 - 3497 (GenBank: 157310483)
PDBExternal DatabaseDetails
U 2930C 6612conflict
A 2948G 6594conflict
U 3196C 6346conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains35
Total formula weight2047244.3
Non-Polymers*Number of molecules1
Total formula weight65.4
All*Total formula weight2047309.7
*Water molecules are not included.

222036

PDB entries from 2024-07-03

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