8ETJ
Fkbp39 associated 60S nascent ribosome State 2
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (1) | RNA (1758-MER) | polymer | 3497 | 1129508.0 | 1 | GenBank (157310483) | Schizosaccharomyces pombe (fission yeast) | |
| 2 | B (2) | RNA (144-MER) | polymer | 165 | 52880.2 | 1 | GenBank (288694) | Schizosaccharomyces pombe (fission yeast) | |
| 3 | C (3) | Protein mak16 | polymer | 302 | 35686.9 | 1 | UniProt (Q9UTE6) Pfam (PF01778) Pfam (PF04874) | Schizosaccharomyces pombe (fission yeast) | |
| 4 | D (B) | 60S ribosomal protein L3-A | polymer | 388 | 43889.8 | 1 | UniProt (P40372) Pfam (PF00297) | Schizosaccharomyces pombe (fission yeast) | |
| 5 | E (C) | 60S ribosomal protein L4-B | polymer | 363 | 39982.3 | 1 | UniProt (Q9P784) Pfam (PF00573) Pfam (PF14374) | Schizosaccharomyces pombe (fission yeast) | |
| 6 | F (E) | 60S ribosomal protein L6 | polymer | 195 | 21286.0 | 1 | UniProt (P79071) Pfam (PF01159) | Schizosaccharomyces pombe (fission yeast) | |
| 7 | G (F) | 60S ribosomal protein L7-B | polymer | 250 | 28499.3 | 1 | UniProt (P25457) Pfam (PF08079) Pfam (PF00327) | Schizosaccharomyces pombe (fission yeast) | |
| 8 | H (G) | 60S ribosomal protein L8 | polymer | 259 | 28659.8 | 1 | UniProt (O13672) Pfam (PF01248) | Schizosaccharomyces pombe (fission yeast) | L4,L7A |
| 9 | I (H) | 60S ribosomal protein L9-A | polymer | 190 | 21545.0 | 1 | UniProt (Q10232) Pfam (PF00347) | Schizosaccharomyces pombe (fission yeast) | |
| 10 | J (L) | 60S ribosomal protein L13 | polymer | 208 | 23578.1 | 1 | UniProt (O74175) Pfam (PF01294) | Schizosaccharomyces pombe (fission yeast) | |
| 11 | K (M) | 60S ribosomal protein L14 | polymer | 134 | 15241.1 | 1 | UniProt (O94238) Pfam (PF00467) Pfam (PF01929) | Schizosaccharomyces pombe (fission yeast) | |
| 12 | L (N) | 60S ribosomal protein L15-A | polymer | 201 | 23862.6 | 1 | UniProt (O74895) Pfam (PF00827) | Schizosaccharomyces pombe (fission yeast) | |
| 13 | M (O) | 60S ribosomal protein L16-B | polymer | 197 | 22215.3 | 1 | UniProt (O42991) Pfam (PF00572) | Schizosaccharomyces pombe (fission yeast) | |
| 14 | N (P) | 60S ribosomal protein L17-A | polymer | 187 | 20854.1 | 1 | UniProt (O14339) Pfam (PF00237) | Schizosaccharomyces pombe (fission yeast) | |
| 15 | O (Q) | 60S ribosomal protein L18-A | polymer | 187 | 21240.9 | 1 | UniProt (Q10192) Pfam (PF17135) | Schizosaccharomyces pombe (fission yeast) | |
| 16 | P (R) | 60S ribosomal protein L19-A | polymer | 193 | 22783.8 | 1 | UniProt (P05734) Pfam (PF01280) Pfam (PF25476) | Schizosaccharomyces pombe (fission yeast) | YL15 |
| 17 | Q (S) | 60S ribosomal protein L20-A | polymer | 176 | 20642.3 | 1 | UniProt (P0CT68) Pfam (PF01775) | Schizosaccharomyces pombe (fission yeast) | YL17 |
| 18 | R (V) | 60S ribosomal protein L23-A | polymer | 139 | 14905.5 | 1 | UniProt (P0CT60) Pfam (PF00238) | Schizosaccharomyces pombe (fission yeast) | |
| 19 | S (W) | Ribosome assembly factor mrt4 | polymer | 241 | 26698.7 | 1 | UniProt (Q9USZ6) Pfam (PF00466) Pfam (PF17777) | Schizosaccharomyces pombe (fission yeast) | mRNA turnover protein 4 |
| 20 | T (Y) | 60S ribosomal protein L26 | polymer | 126 | 14375.9 | 1 | UniProt (P78946) Pfam (PF16906) Pfam (PF00467) | Schizosaccharomyces pombe (fission yeast) | |
| 21 | U (a) | 60S ribosomal protein L28-A | polymer | 148 | 16691.5 | 1 | UniProt (P36585) Pfam (PF00828) | Schizosaccharomyces pombe (fission yeast) | L27A,L29 |
| 22 | V (b) | Probable nucleolar GTP-binding protein 1 | polymer | 642 | 72915.4 | 1 | UniProt (O94659) Pfam (PF17835) Pfam (PF06858) Pfam (PF08155) | Schizosaccharomyces pombe (fission yeast) | |
| 23 | W (d) | 60S ribosomal protein L31 | polymer | 113 | 13290.5 | 1 | UniProt (Q9URX6) Pfam (PF01198) | Schizosaccharomyces pombe (fission yeast) | |
| 24 | X (e) | 60S ribosomal protein L32-A | polymer | 127 | 14491.1 | 1 | UniProt (P79015) Pfam (PF01655) | Schizosaccharomyces pombe (fission yeast) | |
| 25 | Y (f) | 60S ribosomal protein L33-B | polymer | 108 | 12133.2 | 1 | UniProt (Q9USG6) Pfam (PF01247) | Schizosaccharomyces pombe (fission yeast) | L37B |
| 26 | Z (h) | 60S ribosomal protein L35 | polymer | 122 | 14333.9 | 1 | UniProt (O74904) Pfam (PF00831) | Schizosaccharomyces pombe (fission yeast) | |
| 27 | AA (i) | 60S ribosomal protein L36-B | polymer | 99 | 11287.4 | 1 | UniProt (O94658) Pfam (PF01158) | Schizosaccharomyces pombe (fission yeast) | |
| 28 | BA (j) | 60S ribosomal protein L37-B | polymer | 91 | 10112.8 | 1 | UniProt (P05733) Pfam (PF01907) | Schizosaccharomyces pombe (fission yeast) | L37-2,YL27 |
| 29 | CA (r) | Ribosome biogenesis protein nsa2 | polymer | 260 | 29765.5 | 1 | UniProt (Q9UU79) Pfam (PF01201) | Schizosaccharomyces pombe (fission yeast) | |
| 30 | DA (s) | GTPase grn1 | polymer | 470 | 52510.4 | 1 | UniProt (O74791) Pfam (PF08701) Pfam (PF01926) | Schizosaccharomyces pombe (fission yeast) | GTPase in ribosomal export from the nucleolus protein 1,Nuclear GTP-binding protein grn1 |
| 31 | EA (u) | Ribosome biogenesis protein rlp24 | polymer | 192 | 22323.9 | 1 | UniProt (Q10353) Pfam (PF01246) | Schizosaccharomyces pombe (fission yeast) | |
| 32 | FA (w) | AdoMet-dependent rRNA methyltransferase spb1 | polymer | 802 | 91055.2 | 1 | UniProt (O42832) Pfam (PF01728) Pfam (PF11861) Pfam (PF07780) | Schizosaccharomyces pombe (fission yeast) | 2'-O-ribose RNA methyltransferase,S-adenosyl-L-methionine-dependent methyltransferase |
| 33 | GA (y) | Eukaryotic translation initiation factor 6 | polymer | 244 | 26251.4 | 1 | UniProt (O94476) Pfam (PF01912) | Schizosaccharomyces pombe (fission yeast) | eIF-6 |
| 34 | HA (z) | UPF0642 protein C32H8.05 | polymer | 117 | 13328.2 | 1 | UniProt (Q96WW3) Pfam (PF10338) | Schizosaccharomyces pombe (fission yeast) | |
| 35 | IA (T) | 60S ribosomal protein L21-A | polymer | 160 | 18418.2 | 1 | UniProt (Q9UUC1) Pfam (PF01157) | Schizosaccharomyces pombe (fission yeast) | |
| 36 | JA (j) | ZINC ION | non-polymer | 65.4 | 1 | Chemie (ZN) |
Sequence modifications
1: 1 - 3497 (GenBank: 157310483)
| PDB | External Database | Details |
|---|---|---|
| U 2930 | C 6612 | conflict |
| A 2948 | G 6594 | conflict |
| U 3196 | C 6346 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 35 |
| Total formula weight | 2047244.3 | |
| Non-Polymers* | Number of molecules | 1 |
| Total formula weight | 65.4 | |
| All* | Total formula weight | 2047309.7 |
