8ESR
Ytm1 associated nascent 60S ribosome (-fkbp39) State 2
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | 1 | RNA (2142-MER) | polymer | 3497 | 1129521.1 | 1 | GenBank (157310483) | Schizosaccharomyces pombe (fission yeast) | |
| 2 | 2 | RNA (150-MER) | polymer | 165 | 52880.2 | 1 | GenBank (288694) | Schizosaccharomyces pombe (fission yeast) | |
| 3 | 6 | RNA (79-MER) | polymer | 300 | 95732.9 | 1 | GenBank (157310483) | Schizosaccharomyces pombe (fission yeast) | |
| 4 | 7 | Noc2 | polymer | 707 | 81237.2 | 1 | UniProt (Q9P7G0) Pfam (PF03715) In PDB | Schizosaccharomyces pombe (fission yeast) | |
| 5 | 8 | 60S ribosomal protein L39 | polymer | 51 | 6326.5 | 1 | UniProt (P05767) Pfam (PF00832) In PDB | Schizosaccharomyces pombe (fission yeast) | YL36 |
| 6 | A | Ribosome biogenesis protein brx1 | polymer | 295 | 33950.7 | 1 | UniProt (Q9HGL6) Pfam (PF04427) In PDB | Schizosaccharomyces pombe (fission yeast) | |
| 7 | B | 60S ribosomal protein L3-A | polymer | 388 | 43889.8 | 1 | UniProt (P40372) Pfam (PF00297) In PDB | Schizosaccharomyces pombe (fission yeast) | |
| 8 | C | 60S ribosomal protein L4-B | polymer | 363 | 39982.3 | 1 | UniProt (Q9P784) Pfam (PF00573) Pfam (PF14374) In PDB | Schizosaccharomyces pombe (fission yeast) | |
| 9 | D | ATP-dependent RNA helicase has1 | polymer | 578 | 65357.3 | 1 | UniProt (Q09916) Pfam (PF00270) Pfam (PF00271) Pfam (PF13959) In PDB | Schizosaccharomyces pombe (fission yeast) | |
| 10 | E | 60S ribosomal protein L6 | polymer | 195 | 21286.0 | 1 | UniProt (P79071) Pfam (PF01159) In PDB | Schizosaccharomyces pombe (fission yeast) | |
| 11 | F | 60S ribosomal protein L7-B | polymer | 250 | 28499.3 | 1 | UniProt (P25457) Pfam (PF08079) Pfam (PF00327) In PDB | Schizosaccharomyces pombe (fission yeast) | |
| 12 | G | 60S ribosomal protein L8 | polymer | 259 | 28659.8 | 1 | UniProt (O13672) Pfam (PF01248) In PDB | Schizosaccharomyces pombe (fission yeast) | L4,L7A |
| 13 | H | 60S ribosomal protein L9-A | polymer | 190 | 21545.0 | 1 | UniProt (Q10232) Pfam (PF00347) In PDB | Schizosaccharomyces pombe (fission yeast) | |
| 14 | I | Nucleolar complex-associated protein 3 | polymer | 747 | 85236.3 | 1 | UniProt (O94288) Pfam (PF07540) Pfam (PF03914) In PDB | Schizosaccharomyces pombe (fission yeast) | |
| 15 | J | Probable rRNA-processing protein ebp2 | polymer | 333 | 37895.0 | 1 | UniProt (O13802) Pfam (PF05890) In PDB | Schizosaccharomyces pombe (fission yeast) | |
| 16 | K | Putative ribosome biogenesis protein C8F11.04 | polymer | 373 | 41431.9 | 1 | UniProt (Q9UT32) Pfam (PF00687) In PDB | Schizosaccharomyces pombe (fission yeast) | U3 snoRNP-associated protein C8F11.04 |
| 17 | L | 60S ribosomal protein L13 | polymer | 208 | 23578.1 | 1 | UniProt (O74175) Pfam (PF01294) In PDB | Schizosaccharomyces pombe (fission yeast) | |
| 18 | M | 60S ribosomal protein L14 | polymer | 134 | 15241.1 | 1 | UniProt (O94238) Pfam (PF00467) Pfam (PF01929) In PDB | Schizosaccharomyces pombe (fission yeast) | |
| 19 | N | 60S ribosomal protein L15-A | polymer | 201 | 23862.6 | 1 | UniProt (O74895) Pfam (PF00827) In PDB | Schizosaccharomyces pombe (fission yeast) | |
| 20 | O | 60S ribosomal protein L16-B | polymer | 197 | 22215.3 | 1 | UniProt (O42991) Pfam (PF00572) In PDB | Schizosaccharomyces pombe (fission yeast) | |
| 21 | P | 60S ribosomal protein L17-A | polymer | 187 | 20854.1 | 1 | UniProt (O14339) Pfam (PF00237) In PDB | Schizosaccharomyces pombe (fission yeast) | |
| 22 | Q | 60S ribosomal protein L18-A | polymer | 187 | 21240.9 | 1 | UniProt (Q10192) Pfam (PF17135) In PDB | Schizosaccharomyces pombe (fission yeast) | |
| 23 | R | 60S ribosomal protein L19-A | polymer | 193 | 22783.8 | 1 | UniProt (P05734) Pfam (PF01280) In PDB | Schizosaccharomyces pombe (fission yeast) | YL15 |
| 24 | S | 60S ribosomal protein L20-A | polymer | 176 | 20642.3 | 1 | UniProt (P0CT68) Pfam (PF01775) In PDB | Schizosaccharomyces pombe (fission yeast) | YL17 |
| 25 | U | 60S ribosomal protein L22 | polymer | 117 | 13344.4 | 1 | UniProt (Q09668) Pfam (PF01776) In PDB | Schizosaccharomyces pombe (fission yeast) | |
| 26 | V | 60S ribosomal protein L23-A | polymer | 139 | 14905.5 | 1 | UniProt (P0CT60) Pfam (PF00238) In PDB | Schizosaccharomyces pombe (fission yeast) | |
| 27 | W | Ribosome assembly factor mrt4 | polymer | 241 | 26698.7 | 1 | UniProt (Q9USZ6) Pfam (PF00466) Pfam (PF17777) In PDB | Schizosaccharomyces pombe (fission yeast) | mRNA turnover protein 4 |
| 28 | X | 60S ribosomal protein L25-A | polymer | 141 | 15870.7 | 1 | UniProt (Q10330) Pfam (PF03939) Pfam (PF00276) In PDB | Schizosaccharomyces pombe (fission yeast) | |
| 29 | Y | 60S ribosomal protein L26 | polymer | 126 | 14375.9 | 1 | UniProt (P78946) Pfam (PF16906) Pfam (PF00467) In PDB | Schizosaccharomyces pombe (fission yeast) | |
| 30 | Z | 60S ribosomal protein L27-A | polymer | 136 | 15421.3 | 1 | UniProt (O14388) Pfam (PF00467) Pfam (PF01777) In PDB | Schizosaccharomyces pombe (fission yeast) | |
| 31 | a | 60S ribosomal protein L28-A | polymer | 148 | 16691.5 | 1 | UniProt (P36585) Pfam (PF00828) In PDB | Schizosaccharomyces pombe (fission yeast) | L27A,L29 |
| 32 | b | Probable nucleolar GTP-binding protein 1 | polymer | 642 | 72915.4 | 1 | UniProt (O94659) Pfam (PF17835) Pfam (PF06858) Pfam (PF08155) In PDB | Schizosaccharomyces pombe (fission yeast) | |
| 33 | c | 60S ribosomal protein L30-2 | polymer | 117 | 12261.4 | 1 | UniProt (Q9UTP0) Pfam (PF01248) In PDB | Schizosaccharomyces pombe (fission yeast) | |
| 34 | d | 60S ribosomal protein L31 | polymer | 113 | 13290.5 | 1 | UniProt (Q9URX6) Pfam (PF01198) In PDB | Schizosaccharomyces pombe (fission yeast) | |
| 35 | e | 60S ribosomal protein L32-A | polymer | 127 | 14491.1 | 1 | UniProt (P79015) Pfam (PF01655) In PDB | Schizosaccharomyces pombe (fission yeast) | |
| 36 | f | 60S ribosomal protein L33-B | polymer | 108 | 12133.2 | 1 | UniProt (Q9USG6) Pfam (PF01247) In PDB | Schizosaccharomyces pombe (fission yeast) | L37B |
| 37 | g | 60S ribosomal protein L34-A | polymer | 112 | 12898.2 | 1 | UniProt (O42846) Pfam (PF01199) In PDB | Schizosaccharomyces pombe (fission yeast) | |
| 38 | h | 60S ribosomal protein L35 | polymer | 122 | 14333.9 | 1 | UniProt (O74904) Pfam (PF00831) In PDB | Schizosaccharomyces pombe (fission yeast) | |
| 39 | i | 60S ribosomal protein L36-B | polymer | 99 | 11287.4 | 1 | UniProt (O94658) Pfam (PF01158) In PDB | Schizosaccharomyces pombe (fission yeast) | |
| 40 | j | 60S ribosomal protein L37-B | polymer | 91 | 10112.8 | 1 | UniProt (P05733) Pfam (PF01907) In PDB | Schizosaccharomyces pombe (fission yeast) | L37-2,YL27 |
| 41 | k | 60S ribosomal protein L38-1 | polymer | 74 | 8511.1 | 1 | UniProt (Q9USR7) Pfam (PF01781) In PDB | Schizosaccharomyces pombe (fission yeast) | |
| 42 | l | 60S ribosome subunit biogenesis protein nip7 | polymer | 180 | 20892.0 | 1 | UniProt (Q1MTQ9) Pfam (PF17833) Pfam (PF03657) In PDB | Schizosaccharomyces pombe (fission yeast) | |
| 43 | m | Ribosome biogenesis protein erb1 | polymer | 740 | 83052.5 | 1 | UniProt (O74399) Pfam (PF08145) Pfam (PF00400) In PDB | Schizosaccharomyces pombe (fission yeast) | Eukaryotic ribosome biogenesis protein 1 |
| 44 | n | Pescadillo homolog | polymer | 607 | 69294.2 | 1 | UniProt (O60164) Pfam (PF06732) In PDB | Schizosaccharomyces pombe (fission yeast) | Nucleolar protein 7 homolog |
| 45 | o | Uncharacterized RNA-binding protein C1827.05c | polymer | 276 | 31473.4 | 1 | UniProt (O74978) Pfam (PF00076) In PDB | Schizosaccharomyces pombe (fission yeast) | |
| 46 | p | Ribosome biogenesis protein ytm1 | polymer | 440 | 48388.1 | 1 | UniProt (Q9URY0) Pfam (PF08154) Pfam (PF00400) In PDB | Schizosaccharomyces pombe (fission yeast) | |
| 47 | q | 25S rRNA (cytosine-C(5))-methyltransferase nop2 | polymer | 608 | 69029.9 | 1 | UniProt (O94268) Pfam (PF22458) Pfam (PF01189) In PDB | Schizosaccharomyces pombe (fission yeast) | Nucleolar protein 2 |
| 48 | r | Ribosome biogenesis protein nsa2 | polymer | 260 | 29765.5 | 1 | UniProt (Q9UU79) Pfam (PF01201) In PDB | Schizosaccharomyces pombe (fission yeast) | |
| 49 | s | GTPase grn1 | polymer | 470 | 52510.4 | 1 | UniProt (O74791) Pfam (PF08701) Pfam (PF01926) In PDB | Schizosaccharomyces pombe (fission yeast) | GTPase in ribosomal export from the nucleolus protein 1,Nuclear GTP-binding protein grn1 |
| 50 | t | 60S ribosomal protein L7-A | polymer | 249 | 29222.3 | 1 | UniProt (P17937) Pfam (PF08079) Pfam (PF00327) In PDB | Schizosaccharomyces pombe (fission yeast) | |
| 51 | u | Ribosome biogenesis protein rlp24 | polymer | 192 | 22323.9 | 1 | UniProt (Q10353) Pfam (PF01246) In PDB | Schizosaccharomyces pombe (fission yeast) | |
| 52 | v | Nucleolar protein 16 | polymer | 209 | 23990.5 | 1 | UniProt (Q9Y7Z1) Pfam (PF09420) In PDB | Schizosaccharomyces pombe (fission yeast) | |
| 53 | w | AdoMet-dependent rRNA methyltransferase spb1 | polymer | 802 | 91055.2 | 1 | UniProt (O42832) Pfam (PF01728) Pfam (PF11861) Pfam (PF07780) In PDB | Schizosaccharomyces pombe (fission yeast) | 2'-O-ribose RNA methyltransferase,S-adenosyl-L-methionine-dependent methyltransferase |
| 54 | y | Eukaryotic translation initiation factor 6 | polymer | 244 | 26251.4 | 1 | UniProt (O94476) Pfam (PF01912) In PDB | Schizosaccharomyces pombe (fission yeast) | eIF-6 |
| 55 | z | UPF0642 protein C32H8.05 | polymer | 117 | 13328.2 | 1 | UniProt (Q96WW3) Pfam (PF10338) In PDB | Schizosaccharomyces pombe (fission yeast) | |
| 56 | T | 60S ribosomal protein L21-A | polymer | 160 | 18418.2 | 1 | UniProt (Q9UUC1) Pfam (PF01157) In PDB | Schizosaccharomyces pombe (fission yeast) | |
| 57 | j | ZINC ION | non-polymer | 65.4 | 1 | Chemie (ZN) |
Sequence modifications
1: 1 - 3497 (GenBank: 157310483)
6: 1 - 300 (GenBank: 157310483)
I: 1 - 747 (UniProt: O94288)
| PDB | External Database | Details |
|---|---|---|
| C 1741 | U 7796 | conflict |
| PDB | External Database | Details |
|---|---|---|
| C 137 | U 2443549 | conflict |
| G 146 | U 2443558 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Lys 607 | Leu 607 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 56 |
| Total formula weight | 2912388.4 | |
| Non-Polymers* | Number of molecules | 1 |
| Total formula weight | 65.4 | |
| All* | Total formula weight | 2912453.8 |
