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8ESQ

Ytm1 associated nascent 60S ribosome State 2

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(7)
Noc2polymer70781237.21UniProt (Q9P7G0)
Pfam (PF03715)
Schizosaccharomyces pombe (fission yeast)
2B
(1)
RNA (2231-MER)polymer34971129521.11GenBank (157310483)Schizosaccharomyces pombe (fission yeast)
3C
(2)
RNA (150-MER)polymer16552880.21GenBank (288694)Schizosaccharomyces pombe (fission yeast)
4D
(3)
Protein mak16polymer30235686.91UniProt (Q9UTE6)
Pfam (PF01778)
Pfam (PF04874)
Schizosaccharomyces pombe (fission yeast)
5E
(6)
RNA (81-MER)polymer30095732.91GenBank (157310483)Schizosaccharomyces pombe (fission yeast)
6F
(8)
60S ribosomal protein L39polymer516326.51UniProt (P05767)
Pfam (PF00832)
Schizosaccharomyces pombe (fission yeast)YL36
7G
(A)
Ribosome biogenesis protein brx1polymer29533950.71UniProt (Q9HGL6)
Pfam (PF04427)
Schizosaccharomyces pombe (fission yeast)
8H
(B)
60S ribosomal protein L3-Apolymer38843889.81UniProt (P40372)
Pfam (PF00297)
Schizosaccharomyces pombe (fission yeast)
9I
(C)
60S ribosomal protein L4-Bpolymer36339982.31UniProt (Q9P784)
Pfam (PF00573)
Pfam (PF14374)
Schizosaccharomyces pombe (fission yeast)
10J
(D)
ATP-dependent RNA helicase has1polymer57865357.31UniProt (Q09916)
Pfam (PF00271)
Pfam (PF13959)
Pfam (PF00270)
Schizosaccharomyces pombe (fission yeast)
11K
(E)
60S ribosomal protein L6polymer19521286.01UniProt (P79071)
Pfam (PF01159)
Schizosaccharomyces pombe (fission yeast)
12L
(F)
60S ribosomal protein L7-Bpolymer25028499.31UniProt (P25457)
Pfam (PF08079)
Pfam (PF00327)
Schizosaccharomyces pombe (fission yeast)
13M
(G)
60S ribosomal protein L8polymer25928659.81UniProt (O13672)
Pfam (PF01248)
Schizosaccharomyces pombe (fission yeast)L4,L7A
14N
(H)
60S ribosomal protein L9-Apolymer19021545.01UniProt (Q10232)
Pfam (PF00347)
Schizosaccharomyces pombe (fission yeast)
15O
(I)
Nucleolar complex-associated protein 3polymer74785236.31UniProt (O94288)
Pfam (PF07540)
Pfam (PF03914)
Schizosaccharomyces pombe (fission yeast)
16P
(J)
Probable rRNA-processing protein ebp2polymer33337895.01UniProt (O13802)
Pfam (PF05890)
Schizosaccharomyces pombe (fission yeast)
17Q
(K)
Putative ribosome biogenesis protein C8F11.04polymer37341431.91UniProt (Q9UT32)
Pfam (PF00687)
Schizosaccharomyces pombe (fission yeast)U3 snoRNP-associated protein C8F11.04
18R
(L)
60S ribosomal protein L13polymer20823578.11UniProt (O74175)
Pfam (PF01294)
Schizosaccharomyces pombe (fission yeast)
19S
(M)
60S ribosomal protein L14polymer13415241.11UniProt (O94238)
Pfam (PF00467)
Pfam (PF01929)
Schizosaccharomyces pombe (fission yeast)
20T
(N)
60S ribosomal protein L15-Apolymer20123862.61UniProt (O74895)
Pfam (PF00827)
Schizosaccharomyces pombe (fission yeast)
21U
(O)
60S ribosomal protein L16-Bpolymer19722215.31UniProt (O42991)
Pfam (PF00572)
Schizosaccharomyces pombe (fission yeast)
22V
(P)
60S ribosomal protein L17-Apolymer18720854.11UniProt (O14339)
Pfam (PF00237)
Schizosaccharomyces pombe (fission yeast)
23W
(Q)
60S ribosomal protein L18-Apolymer18721240.91UniProt (Q10192)
Pfam (PF17135)
Schizosaccharomyces pombe (fission yeast)
24X
(R)
60S ribosomal protein L19-Apolymer19322783.81UniProt (P05734)
Pfam (PF01280)
Schizosaccharomyces pombe (fission yeast)YL15
25Y
(S)
60S ribosomal protein L20-Apolymer17620642.31UniProt (P0CT68)
Pfam (PF01775)
Schizosaccharomyces pombe (fission yeast)YL17
26Z
(U)
60S ribosomal protein L22polymer11713344.41UniProt (Q09668)
Pfam (PF01776)
Schizosaccharomyces pombe (fission yeast)
27AA
(V)
60S ribosomal protein L23-Apolymer13914905.51UniProt (P0CT60)
Pfam (PF00238)
Schizosaccharomyces pombe (fission yeast)
28BA
(W)
Ribosome assembly factor mrt4polymer24126698.71UniProt (Q9USZ6)
Pfam (PF00466)
Pfam (PF17777)
Schizosaccharomyces pombe (fission yeast)mRNA turnover protein 4
29CA
(X)
60S ribosomal protein L25-Apolymer14115870.71UniProt (Q10330)
Pfam (PF03939)
Pfam (PF00276)
Schizosaccharomyces pombe (fission yeast)
30DA
(Y)
60S ribosomal protein L26polymer12614375.91UniProt (P78946)
Pfam (PF16906)
Pfam (PF00467)
Schizosaccharomyces pombe (fission yeast)
31EA
(Z)
60S ribosomal protein L27-Apolymer13615421.31UniProt (O14388)
Pfam (PF00467)
Pfam (PF01777)
Schizosaccharomyces pombe (fission yeast)
32FA
(a)
60S ribosomal protein L28-Apolymer14816691.51UniProt (P36585)
Pfam (PF00828)
Schizosaccharomyces pombe (fission yeast)L27A,L29
33GA
(b)
Probable nucleolar GTP-binding protein 1polymer64272915.41UniProt (O94659)
Pfam (PF17835)
Pfam (PF06858)
Pfam (PF08155)
Schizosaccharomyces pombe (fission yeast)
34HA
(c)
60S ribosomal protein L30-2polymer11712261.41UniProt (Q9UTP0)
Pfam (PF01248)
Schizosaccharomyces pombe (fission yeast)
35IA
(d)
60S ribosomal protein L31polymer11313290.51UniProt (Q9URX6)
Pfam (PF01198)
Schizosaccharomyces pombe (fission yeast)
36JA
(e)
60S ribosomal protein L32-Apolymer12714491.11UniProt (P79015)
Pfam (PF01655)
Schizosaccharomyces pombe (fission yeast)
37KA
(f)
60S ribosomal protein L33-Bpolymer10812133.21UniProt (Q9USG6)
Pfam (PF01247)
Schizosaccharomyces pombe (fission yeast)L37B
38LA
(g)
60S ribosomal protein L34-Apolymer11212898.21UniProt (O42846)
Pfam (PF01199)
Schizosaccharomyces pombe (fission yeast)
39MA
(h)
60S ribosomal protein L35polymer12214333.91UniProt (O74904)
Pfam (PF00831)
Schizosaccharomyces pombe (fission yeast)
40NA
(i)
60S ribosomal protein L36-Bpolymer9911287.41UniProt (O94658)
Pfam (PF01158)
Schizosaccharomyces pombe (fission yeast)
41OA
(j)
60S ribosomal protein L37-Bpolymer9110112.81UniProt (P05733)
Pfam (PF01907)
Schizosaccharomyces pombe (fission yeast)L37-2,YL27
42PA
(k)
60S ribosomal protein L38-1polymer748511.11UniProt (Q9USR7)
Pfam (PF01781)
Schizosaccharomyces pombe (fission yeast)
43QA
(l)
60S ribosome subunit biogenesis protein nip7polymer18020892.01UniProt (Q1MTQ9)
Pfam (PF17833)
Pfam (PF03657)
Schizosaccharomyces pombe (fission yeast)
44RA
(m)
Ribosome biogenesis protein erb1polymer74083052.51UniProt (O74399)
Pfam (PF08145)
Pfam (PF00400)
Schizosaccharomyces pombe (fission yeast)Eukaryotic ribosome biogenesis protein 1
45SA
(n)
Pescadillo homologpolymer60769294.21UniProt (O60164)
Pfam (PF06732)
Schizosaccharomyces pombe (fission yeast)Nucleolar protein 7 homolog
46TA
(o)
Uncharacterized RNA-binding protein C1827.05cpolymer27631473.41UniProt (O74978)
Pfam (PF00076)
Schizosaccharomyces pombe (fission yeast)
47UA
(p)
Ribosome biogenesis protein ytm1polymer44048388.11UniProt (Q9URY0)
Pfam (PF08154)
Pfam (PF00400)
Schizosaccharomyces pombe (fission yeast)
48VA
(q)
25S rRNA (cytosine-C(5))-methyltransferase nop2polymer60869029.91UniProt (O94268)
Pfam (PF22458)
Pfam (PF01189)
Schizosaccharomyces pombe (fission yeast)Nucleolar protein 2
49WA
(r)
Ribosome biogenesis protein nsa2polymer26029765.51UniProt (Q9UU79)
Pfam (PF01201)
Schizosaccharomyces pombe (fission yeast)
50XA
(s)
GTPase grn1polymer47052510.41UniProt (O74791)
Pfam (PF08701)
Pfam (PF01926)
Schizosaccharomyces pombe (fission yeast)GTPase in ribosomal export from the nucleolus protein 1,Nuclear GTP-binding protein grn1
51YA
(t)
60S ribosomal protein L7-Apolymer24929222.31UniProt (P17937)
Pfam (PF08079)
Pfam (PF00327)
Schizosaccharomyces pombe (fission yeast)
52ZA
(u)
Ribosome biogenesis protein rlp24polymer19222323.91UniProt (Q10353)
Pfam (PF01246)
Schizosaccharomyces pombe (fission yeast)
53AB
(v)
Nucleolar protein 16polymer20923990.51UniProt (Q9Y7Z1)
Pfam (PF09420)
Schizosaccharomyces pombe (fission yeast)
54BB
(w)
AdoMet-dependent rRNA methyltransferase spb1polymer80291055.21UniProt (O42832)
Pfam (PF01728)
Pfam (PF11861)
Pfam (PF07780)
Schizosaccharomyces pombe (fission yeast)2'-O-ribose RNA methyltransferase,S-adenosyl-L-methionine-dependent methyltransferase
55CB
(x)
Brix domain-containing protein C4F8.04polymer30635898.91UniProt (O14180)
Pfam (PF04427)
Schizosaccharomyces pombe (fission yeast)
56DB
(y)
Eukaryotic translation initiation factor 6polymer24426251.41UniProt (O94476)
Pfam (PF01912)
Schizosaccharomyces pombe (fission yeast)eIF-6
57EB
(z)
UPF0642 protein C32H8.05polymer11713328.21UniProt (Q96WW3)
Pfam (PF10338)
Schizosaccharomyces pombe (fission yeast)
58FB
(T)
60S ribosomal protein L21-Apolymer16018418.21UniProt (Q9UUC1)
Pfam (PF01157)
Schizosaccharomyces pombe (fission yeast)
59GB
(j)
ZINC IONnon-polymer65.41Chemie (ZN)
Sequence modifications
1: 1 - 3497 (GenBank: 157310483)
PDBExternal DatabaseDetails
C 1746U 7796conflict
6: 1 - 300 (GenBank: 157310483)
PDBExternal DatabaseDetails
C 137U 2443549conflict
G 146U 2443558conflict
I: 1 - 747 (UniProt: O94288)
PDBExternal DatabaseDetails
Lys 607Leu 607conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains58
Total formula weight2983974.2
Non-Polymers*Number of molecules1
Total formula weight65.4
All*Total formula weight2984039.6
*Water molecules are not included.

246905

PDB entries from 2025-12-31

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