8EJG
Structure of lineage VII Lassa virus glycoprotein complex (strain Togo/2016/7082)
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B, C | Glycoprotein GP1 | polymer | 196 | 22180.1 | 3 | UniProt (A0A142I7X5) Pfam (PF00798) In PDB | Lassa mammarenavirus | |
2 | a, b, c | Glycoprotein GP2 | polymer | 165 | 19176.7 | 3 | UniProt (A0A142I7X5) Pfam (PF00798) In PDB | Lassa mammarenavirus | Pre-GP-C |
3 | D, M, T | alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 910.8 | 3 | In PDB GlyTouCan (G22768VO) | |||
4 | X, Y, Z, e, g... | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 15 | In PDB GlyTouCan (G15407YE) | |||
5 | F, O, V | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 3 | In PDB GlyTouCan (G42666HT) | |||
6 | G, P, W | beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 3 | In PDB GlyTouCan (G33431MT) | |||
7 | d, f, K | alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1235.1 | 3 | In PDB GlyTouCan (G07617FP) | |||
8 | a, b, c | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 6 | Chemie (NAG) |
Sequence modifications
A, B, C: 59 - 254 (UniProt: A0A142I7X5)
a, b, c: 259 - 423 (UniProt: A0A142I7X5)
PDB | External Database | Details |
---|---|---|
Cys 206 | Arg 206 | engineered mutation |
PDB | External Database | Details |
---|---|---|
Pro 328 | Glu 328 | engineered mutation |
Cys 359 | Gly 359 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 6 |
Total formula weight | 124070.4 | |
Branched | Number of molecules | 27 |
Total formula weight | 18268.7 | |
Non-Polymers* | Number of molecules | 6 |
Total formula weight | 1327.2 | |
All* | Total formula weight | 143666.4 |