8DY9
Streptomyces venezuelae RNAP unconstrained open promoter complex with WhiA and WhiB transcription factors
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B | DNA-directed RNA polymerase subunit alpha | polymer | 340 | 36734.6 | 2 | UniProt (F2RJV9) Pfam (PF01193) Pfam (PF01000) Pfam (PF03118) In PDB | Streptomyces venezuelae ATCC 10712 | RNAP subunit alpha,RNA polymerase subunit alpha,Transcriptase subunit alpha |
| 2 | C | DNA-directed RNA polymerase subunit beta | polymer | 1178 | 130459.0 | 1 | UniProt (F2RIS5) Pfam (PF04563) Pfam (PF04561) Pfam (PF04565) Pfam (PF10385) Pfam (PF00562) Pfam (PF04560) In PDB | Streptomyces venezuelae | RNAP subunit beta,RNA polymerase subunit beta,Transcriptase subunit beta |
| 3 | D | DNA-directed RNA polymerase subunit beta' | polymer | 1298 | 144614.8 | 1 | UniProt (A0A5P2AAC9) Pfam (PF04997) Pfam (PF00623) Pfam (PF04983) Pfam (PF05000) Pfam (PF04998) UniProt (by SIFTS) (F2RIS6) In PDB | Streptomyces venezuelae | RNAP subunit beta',RNA polymerase subunit beta',Transcriptase subunit beta' |
| 4 | E | DNA-directed RNA polymerase subunit omega | polymer | 90 | 9731.0 | 1 | UniProt (F2RCK7) Pfam (PF01192) In PDB | Streptomyces venezuelae | RNAP omega subunit,RNA polymerase omega subunit,Transcriptase subunit omega |
| 5 | F | RNA polymerase sigma factor SigA | polymer | 516 | 56696.2 | 1 | UniProt (F2R7X6) Pfam (PF00140) Pfam (PF04542) Pfam (PF04539) Pfam (PF04545) In PDB | Streptomyces venezuelae | |
| 6 | G | RNA polymerase-binding protein RbpA | polymer | 124 | 14116.1 | 1 | UniProt (F2RBH1) Pfam (PF13397) In PDB | Streptomyces venezuelae | |
| 7 | H | Transcriptional regulator WhiB | polymer | 87 | 10011.2 | 1 | UniProt (A0A5P2AC98) Pfam (PF02467) UniProt (by SIFTS) (F2R611) In PDB | Streptomyces venezuelae | |
| 8 | I | Probable cell division protein WhiA | polymer | 327 | 34959.2 | 1 | UniProt (A0A5P1ZKC3) Pfam (PF10298) Pfam (PF14527) Pfam (PF02650) UniProt (by SIFTS) (F2RGQ4) In PDB | Streptomyces venezuelae | |
| 9 | O, Q | DNA (38-MER) | polymer | 49 | 15068.7 | 2 | Streptomyces venezuelae | ||
| 10 | P, R | DNA (38-MER) | polymer | 49 | 15121.7 | 2 | Streptomyces venezuelae | ||
| 11 | D, I | ZINC ION | non-polymer | 65.4 | 3 | Chemie (ZN) | |||
| 12 | D | MAGNESIUM ION | non-polymer | 24.3 | 1 | Chemie (MG) | |||
| 13 | H | IRON/SULFUR CLUSTER | non-polymer | 351.6 | 1 | Chemie (SF4) |
Sequence modifications
D: 2 - 1299 (UniProt: A0A5P2AAC9)
| PDB | External Database | Details |
|---|---|---|
| Asp 2 | Leu 2 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 13 |
| Total formula weight | 534437.3 | |
| Non-Polymers* | Number of molecules | 5 |
| Total formula weight | 572.2 | |
| All* | Total formula weight | 535009.5 |
