8DY7
Streptomyces venezuelae RNAP transcription open promoter complex with WhiA and WhiB transcription factors
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B (A, B) | DNA-directed RNA polymerase subunit alpha | polymer | 340 | 36734.6 | 2 | UniProt (F2RJV9) Pfam (PF01193) Pfam (PF01000) Pfam (PF03118) | Streptomyces venezuelae | RNAP subunit alpha,RNA polymerase subunit alpha,Transcriptase subunit alpha |
| 2 | C (C) | DNA-directed RNA polymerase subunit beta | polymer | 1178 | 130459.0 | 1 | UniProt (F2RIS5) Pfam (PF04563) Pfam (PF04561) Pfam (PF04565) Pfam (PF10385) Pfam (PF00562) Pfam (PF04560) | Streptomyces venezuelae | RNAP subunit beta,RNA polymerase subunit beta,Transcriptase subunit beta |
| 3 | D (D) | DNA-directed RNA polymerase subunit beta' | polymer | 1298 | 144614.8 | 1 | UniProt (F2RIS6) Pfam (PF04997) Pfam (PF00623) Pfam (PF04983) Pfam (PF05000) Pfam (PF04998) | Streptomyces venezuelae | RNAP subunit beta',RNA polymerase subunit beta',Transcriptase subunit beta' |
| 4 | E (E) | DNA-directed RNA polymerase subunit omega | polymer | 90 | 9698.9 | 1 | UniProt (F2RCK7) Pfam (PF01192) | Streptomyces venezuelae | RNAP omega subunit,RNA polymerase omega subunit,Transcriptase subunit omega |
| 5 | F (F) | RNA polymerase sigma factor SigA | polymer | 516 | 56680.2 | 1 | UniProt (F2R7X6) Pfam (PF00140) Pfam (PF04542) Pfam (PF04539) Pfam (PF04545) | Streptomyces venezuelae | |
| 6 | G (G) | RNA polymerase-binding protein RbpA | polymer | 124 | 14116.1 | 1 | UniProt (F2RBH1) Pfam (PF13397) | Streptomyces venezuelae | |
| 7 | H (H) | Transcriptional regulator WhiB | polymer | 87 | 10069.3 | 1 | UniProt (F2R611) Pfam (PF02467) | Streptomyces venezuelae | |
| 8 | I (I) | Probable cell division protein WhiA | polymer | 353 | 37956.4 | 1 | UniProt (F2RGQ4) Pfam (PF10298) Pfam (PF14527) Pfam (PF02650) | Streptomyces venezuelae | |
| 9 | J (O) | DNA (78-MER) | polymer | 100 | 30769.6 | 1 | GenBank (1108527890) | Streptomyces venezuelae | |
| 10 | K (P) | DNA (71-MER) | polymer | 100 | 30942.7 | 1 | GenBank (1108527890) | Streptomyces venezuelae | |
| 11 | L, M, P (D, I) | ZINC ION | non-polymer | 65.4 | 3 | Chemie (ZN) | |||
| 12 | N (D) | MAGNESIUM ION | non-polymer | 24.3 | 1 | Chemie (MG) | |||
| 13 | O (H) | IRON/SULFUR CLUSTER | non-polymer | 351.6 | 1 | Chemie (SF4) |
Sequence modifications
D: 2 - 1299 (UniProt: F2RIS6)
E: 1 - 90 (UniProt: F2RCK7)
F: 0 - 515 (UniProt: F2R7X6)
H: 1 - 87 (UniProt: F2R611)
I: 1 - 327 (UniProt: F2RGQ4)
| PDB | External Database | Details |
|---|---|---|
| Asp 2 | Leu 2 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Val 1 | Met 1 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Met 0 | Phe 52 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Lys 85 | Ala 85 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Met -25 | - | expression tag |
| Gly -24 | - | expression tag |
| Ser -23 | - | expression tag |
| Ser -22 | - | expression tag |
| His -21 | - | expression tag |
| His -20 | - | expression tag |
| His -19 | - | expression tag |
| His -18 | - | expression tag |
| His -17 | - | expression tag |
| His -16 | - | expression tag |
| His -15 | - | expression tag |
| His -14 | - | expression tag |
| His -13 | - | expression tag |
| His -12 | - | expression tag |
| Ser -11 | - | expression tag |
| Ser -10 | - | expression tag |
| Gly -9 | - | expression tag |
| Leu -8 | - | expression tag |
| Glu -7 | - | expression tag |
| Val -6 | - | expression tag |
| Leu -5 | - | expression tag |
| Phe -4 | - | expression tag |
| Gln -3 | - | expression tag |
| Gly -2 | - | expression tag |
| Pro -1 | - | expression tag |
| His 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 11 |
| Total formula weight | 538776.2 | |
| Non-Polymers* | Number of molecules | 5 |
| Total formula weight | 572.2 | |
| All* | Total formula weight | 539348.4 |
