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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

8DY7

Streptomyces venezuelae RNAP transcription open promoter complex with WhiA and WhiB transcription factors

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, BDNA-directed RNA polymerase subunit alphapolymer34036734.62UniProt (F2RJV9)
Pfam (PF01193)
Pfam (PF01000)
Pfam (PF03118)
In PDB		Streptomyces venezuelaeRNAP subunit alpha,RNA polymerase subunit alpha,Transcriptase subunit alpha
2CDNA-directed RNA polymerase subunit betapolymer1178130459.01UniProt (F2RIS5)
Pfam (PF04563)
Pfam (PF04561)
Pfam (PF04565)
Pfam (PF10385)
Pfam (PF00562)
Pfam (PF04560)
In PDB		Streptomyces venezuelaeRNAP subunit beta,RNA polymerase subunit beta,Transcriptase subunit beta
3DDNA-directed RNA polymerase subunit beta'polymer1298144614.81UniProt (F2RIS6)
Pfam (PF04997)
Pfam (PF00623)
Pfam (PF04983)
Pfam (PF05000)
Pfam (PF04998)
In PDB		Streptomyces venezuelaeRNAP subunit beta',RNA polymerase subunit beta',Transcriptase subunit beta'
4EDNA-directed RNA polymerase subunit omegapolymer909698.91UniProt (F2RCK7)
Pfam (PF01192)
In PDB		Streptomyces venezuelaeRNAP omega subunit,RNA polymerase omega subunit,Transcriptase subunit omega
5FRNA polymerase sigma factor SigApolymer51656680.21UniProt (F2R7X6)
Pfam (PF00140)
Pfam (PF04542)
Pfam (PF04539)
Pfam (PF04545)
In PDB		Streptomyces venezuelae
6GRNA polymerase-binding protein RbpApolymer12414116.11UniProt (F2RBH1)
Pfam (PF13397)
In PDB		Streptomyces venezuelae
7HTranscriptional regulator WhiBpolymer8710069.31UniProt (F2R611)
Pfam (PF02467)
In PDB		Streptomyces venezuelae
8IProbable cell division protein WhiApolymer35337956.41UniProt (F2RGQ4)
Pfam (PF10298)
Pfam (PF14527)
Pfam (PF02650)
In PDB		Streptomyces venezuelae
9ODNA (78-MER)polymer10030769.61GenBank (1108527890)Streptomyces venezuelae
10PDNA (71-MER)polymer10030942.71GenBank (1108527890)Streptomyces venezuelae
11D, IZINC IONnon-polymer65.43Chemie (ZN)
12DMAGNESIUM IONnon-polymer24.31Chemie (MG)
13HIRON/SULFUR CLUSTERnon-polymer351.61Chemie (SF4)
Sequence modifications
D: 2 - 1299 (UniProt: F2RIS6)
PDBExternal DatabaseDetails
Asp 2Leu 2conflict
E: 1 - 90 (UniProt: F2RCK7)
PDBExternal DatabaseDetails
Val 1Met 1conflict
F: 0 - 515 (UniProt: F2R7X6)
PDBExternal DatabaseDetails
Met 0Phe 52conflict
H: 1 - 87 (UniProt: F2R611)
PDBExternal DatabaseDetails
Lys 85Ala 85conflict
I: 1 - 327 (UniProt: F2RGQ4)
PDBExternal DatabaseDetails
Met -25-expression tag
Gly -24-expression tag
Ser -23-expression tag
Ser -22-expression tag
His -21-expression tag
His -20-expression tag
His -19-expression tag
His -18-expression tag
His -17-expression tag
His -16-expression tag
His -15-expression tag
His -14-expression tag
His -13-expression tag
His -12-expression tag
Ser -11-expression tag
Ser -10-expression tag
Gly -9-expression tag
Leu -8-expression tag
Glu -7-expression tag
Val -6-expression tag
Leu -5-expression tag
Phe -4-expression tag
Gln -3-expression tag
Gly -2-expression tag
Pro -1-expression tag
His 0-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains11
Total formula weight538776.2
Non-Polymers*Number of molecules5
Total formula weight572.2
All*Total formula weight539348.4
*Water molecules are not included.

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PDB entries from 2024-07-24

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