8DVF
T4 Bacteriophage primosome with single strand DNA, state 1
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B, C, D, E... | DnaB-like replicative helicase | polymer | 475 | 53662.8 | 6 | UniProt (P04530) Pfam (PF03796) In PDB | Escherichia phage T4 | Gene product 41,Gp41 |
2 | M | DNA (5'-D(P*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*T)-3') | polymer | 12 | 3605.4 | 1 | Escherichia phage T4 | ||
3 | H | DNA primase | polymer | 342 | 39842.0 | 1 | UniProt (P04520) In PDB | Escherichia phage T4 | DNA priming protein |
4 | T | DNA (5'-D(P*GP*GP*CP*TP*G)-3') | polymer | 5 | 1536.0 | 1 | Escherichia phage T4 | ||
5 | B, C, D, E, F | PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER | non-polymer | 523.2 | 5 | Chemie (AGS) | |||
6 | B, C, D, E, F | MAGNESIUM ION | non-polymer | 24.3 | 5 | Chemie (MG) |
Sequence modifications
A, B, C, D, E, F: 1 - 432 (UniProt: P04530)
H: 3 - 341 (UniProt: P04520)
PDB | External Database | Details |
---|---|---|
Gln 433 | - | expression tag |
Asp 434 | - | expression tag |
Ser 435 | - | expression tag |
Thr 436 | - | expression tag |
Pro 437 | - | expression tag |
Thr 438 | - | expression tag |
Glu 439 | - | expression tag |
Val 440 | - | expression tag |
Asn 441 | - | expression tag |
Glu 442 | - | expression tag |
Val 443 | - | expression tag |
Ala 444 | - | expression tag |
Gly 445 | - | expression tag |
Ser 446 | - | expression tag |
Gln 447 | - | expression tag |
Gln 448 | - | expression tag |
Ile 449 | - | expression tag |
Gln 450 | - | expression tag |
Ala 451 | - | expression tag |
Glu 452 | - | expression tag |
Gln 453 | - | expression tag |
Asn 454 | - | expression tag |
Arg 455 | - | expression tag |
Tyr 456 | - | expression tag |
Gln 457 | - | expression tag |
Arg 458 | - | expression tag |
Asn 459 | - | expression tag |
Glu 460 | - | expression tag |
Ser 461 | - | expression tag |
Thr 462 | - | expression tag |
Arg 463 | - | expression tag |
Ala 464 | - | expression tag |
Gln 465 | - | expression tag |
Leu 466 | - | expression tag |
Asp 467 | - | expression tag |
Ala 468 | - | expression tag |
Leu 469 | - | expression tag |
Ala 470 | - | expression tag |
Asn 471 | - | expression tag |
Glu 472 | - | expression tag |
Leu 473 | - | expression tag |
Lys 474 | - | expression tag |
Phe 475 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Met 1 | - | initiating methionine |
Ser 2 | - | expression tag |
Ile 342 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 9 |
Total formula weight | 366960.5 | |
Non-Polymers* | Number of molecules | 10 |
Total formula weight | 2737.8 | |
All* | Total formula weight | 369698.3 |