8DV3
Crystal structure of human CD1b presenting Phosphatidylinositol C34:1
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | T-cell surface glycoprotein CD1b | polymer | 300 | 33530.7 | 1 | UniProt (P29016) Pfam (PF16497) Pfam (PF07654) In PDB | Homo sapiens (human) | |
2 | B | Beta-2-microglobulin | polymer | 101 | 11974.5 | 1 | UniProt (P61769) Pfam (PF07654) In PDB | Homo sapiens (human) | |
3 | C | alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)][alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1203.1 | 1 | In PDB GlyTouCan (G11460AB) | |||
4 | D | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 570.5 | 1 | In PDB GlyTouCan (G21290RB) | |||
5 | A | 1,2-ETHANEDIOL | non-polymer | 62.1 | 6 | Chemie (EDO) | |||
6 | A, B | CHLORIDE ION | non-polymer | 35.5 | 6 | Chemie (CL) | |||
7 | A | SODIUM ION | non-polymer | 23.0 | 2 | Chemie (NA) | |||
8 | A | TETRACOSYL PALMITATE | non-polymer | 593.1 | 1 | Chemie (6UL) | |||
9 | A | IODIDE ION | non-polymer | 126.9 | 2 | Chemie (IOD) | |||
10 | A | 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOINOSITOL | non-polymer | 836.1 | 1 | Chemie (PIE) | |||
11 | water | water | 18.0 | 300 | Chemie (HOH) |
Sequence modifications
A: 2 - 278 (UniProt: P29016)
B: 3 - 101 (UniProt: P61769)
PDB | External Database | Details |
---|---|---|
Gly 279 | - | expression tag |
Ser 280 | - | expression tag |
Gly 281 | - | expression tag |
Leu 282 | - | expression tag |
Asn 283 | - | expression tag |
Asp 284 | - | expression tag |
Ile 285 | - | expression tag |
Phe 286 | - | expression tag |
Glu 287 | - | expression tag |
Ala 288 | - | expression tag |
Gln 289 | - | expression tag |
Lys 290 | - | expression tag |
Ile 291 | - | expression tag |
Glu 292 | - | expression tag |
Trp 293 | - | expression tag |
His 294 | - | expression tag |
Glu 295 | - | expression tag |
His 296 | - | expression tag |
His 297 | - | expression tag |
His 298 | - | expression tag |
His 299 | - | expression tag |
His 300 | - | expression tag |
His 301 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Pro 1 | - | expression tag |
Lys 2 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 2 |
Total formula weight | 45505.1 | |
Branched | Number of molecules | 2 |
Total formula weight | 1773.6 | |
Non-Polymers* | Number of molecules | 18 |
Total formula weight | 2314.0 | |
All* | Total formula weight | 49592.8 |