8DR5
Open state of RFC:PCNA bound to a 3' ss/dsDNA junction (DNA2) with NTD
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | Replication factor C subunit 1 | polymer | 918 | 101689.1 | 1 | UniProt (P38630) Pfam (PF00533) Pfam (PF00004) Pfam (PF25361) Pfam (PF08519) | Saccharomyces cerevisiae (baker's yeast) | Replication factor C1,Activator 1 95 kDa subunit,Cell division control protein 44 |
| 2 | B (B) | Replication factor C subunit 4 | polymer | 323 | 36201.0 | 1 | UniProt (P40339) Pfam (PF00004) Pfam (PF08542) | Saccharomyces cerevisiae (baker's yeast) | Replication factor C4,Activator 1 37 kDa subunit |
| 3 | C (C) | Replication factor C subunit 3 | polymer | 340 | 38254.5 | 1 | UniProt (P38629) Pfam (PF00004) Pfam (PF25361) Pfam (PF08542) | Saccharomyces cerevisiae (baker's yeast) | Replication factor C3,Activator 1 40 kDa subunit |
| 4 | D (D) | Replication factor C subunit 2 | polymer | 353 | 39794.5 | 1 | UniProt (P40348) Pfam (PF00004) Pfam (PF21960) Pfam (PF08542) | Saccharomyces cerevisiae (baker's yeast) | Replication factor C2,Activator 1 41 kDa subunit |
| 5 | E (E) | Replication factor C subunit 5 | polymer | 354 | 39993.6 | 1 | UniProt (P38251) Pfam (PF13177) Pfam (PF21960) Pfam (PF22534) | Saccharomyces cerevisiae (baker's yeast) | Replication factor C5,Activator 1 40 kDa subunit |
| 6 | F, G, H (F, G, H) | Proliferating cell nuclear antigen | polymer | 277 | 30991.3 | 3 | UniProt (A0A6B7JGY6) Pfam (PF00705) Pfam (PF02747) UniProt (by SIFTS) (P15873) | Saccharomyces cerevisiae (baker's yeast) | |
| 7 | I (I) | DNA (5'-D(P*TP*TP*TP*CP*GP*GP*GP*GP*GP*GP*GP*CP*C)-3') | polymer | 13 | 4039.6 | 1 | Saccharomyces cerevisiae | ||
| 8 | J (J) | DNA (5'-D(P*GP*GP*CP*CP*CP*CP*CP*CP*CP*GP*GP*C)-3') | polymer | 12 | 3585.3 | 1 | Saccharomyces cerevisiae | ||
| 9 | K (K) | DNA (5'-D(P*AP*GP*GP*GP*GP*GP*GP*GP*GP*GP*G)-3') | polymer | 11 | 3560.3 | 1 | Saccharomyces cerevisiae | ||
| 10 | L (L) | DNA (5'-D(P*CP*CP*CP*CP*CP*CP*CP*CP*CP*CP*TP*TP*T)-3') | polymer | 13 | 3759.4 | 1 | Saccharomyces cerevisiae | ||
| 11 | M, O, Q, S (A, B, C, D) | MAGNESIUM ION | non-polymer | 24.3 | 4 | Chemie (MG) PubChem (888) | |||
| 12 | N, P, R, T (A, B, C, D) | PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER | non-polymer | 523.2 | 4 | Chemie (AGS) | |||
| 13 | U (E) | GUANOSINE-5'-DIPHOSPHATE | non-polymer | 443.2 | 1 | Chemie (GDP) PubChem (136073927) PubChem (135398619) PubChem (135402030) PubChem (135431654) PubChem (135566337) PubChem (135760556) PubChem (136026707) PubChem (136053418) PubChem (136663964) PubChem (136664748) PubChem (136759848) PubChem (136759849) PubChem (136759850) PubChem (136836636) PubChem (136847074) PubChem (172898537) |
Sequence modifications
A: 1 - 861 (UniProt: P38630)
F, G, H: 1 - 258 (UniProt: A0A6B7JGY6)
| PDB | External Database | Details |
|---|---|---|
| Gly 862 | - | expression tag |
| Leu 863 | - | expression tag |
| Asn 864 | - | expression tag |
| Glu 865 | - | expression tag |
| Asn 866 | - | expression tag |
| Leu 867 | - | expression tag |
| Tyr 868 | - | expression tag |
| Phe 869 | - | expression tag |
| Gln 870 | - | expression tag |
| Gly 871 | - | expression tag |
| Gly 872 | - | expression tag |
| Gly 873 | - | expression tag |
| Asp 874 | - | expression tag |
| Tyr 875 | - | expression tag |
| Lys 876 | - | expression tag |
| Asp 877 | - | expression tag |
| Asp 878 | - | expression tag |
| Asp 879 | - | expression tag |
| Asp 880 | - | expression tag |
| Lys 881 | - | expression tag |
| Asp 882 | - | expression tag |
| Tyr 883 | - | expression tag |
| Lys 884 | - | expression tag |
| Asp 885 | - | expression tag |
| Asp 886 | - | expression tag |
| Asp 887 | - | expression tag |
| Asp 888 | - | expression tag |
| Lys 889 | - | expression tag |
| Asp 890 | - | expression tag |
| Tyr 891 | - | expression tag |
| Lys 892 | - | expression tag |
| Asp 893 | - | expression tag |
| Asp 894 | - | expression tag |
| Asp 895 | - | expression tag |
| Asp 896 | - | expression tag |
| Lys 897 | - | expression tag |
| Gly 898 | - | expression tag |
| Gly 899 | - | expression tag |
| Lys 900 | - | expression tag |
| Asp 901 | - | expression tag |
| His 902 | - | expression tag |
| Leu 903 | - | expression tag |
| Ile 904 | - | expression tag |
| His 905 | - | expression tag |
| Asn 906 | - | expression tag |
| Val 907 | - | expression tag |
| His 908 | - | expression tag |
| Lys 909 | - | expression tag |
| Glu 910 | - | expression tag |
| Glu 911 | - | expression tag |
| His 912 | - | expression tag |
| Ala 913 | - | expression tag |
| His 914 | - | expression tag |
| Ala 915 | - | expression tag |
| His 916 | - | expression tag |
| Asn 917 | - | expression tag |
| Lys 918 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Met -18 | - | expression tag |
| Gly -17 | - | expression tag |
| Ser -16 | - | expression tag |
| Ser -15 | - | expression tag |
| His -14 | - | expression tag |
| His -13 | - | expression tag |
| His -12 | - | expression tag |
| His -11 | - | expression tag |
| His -10 | - | expression tag |
| His -9 | - | expression tag |
| Ser -8 | - | expression tag |
| Ser -7 | - | expression tag |
| Gly -6 | - | expression tag |
| Leu -5 | - | expression tag |
| Val -4 | - | expression tag |
| Pro -3 | - | expression tag |
| Arg -2 | - | expression tag |
| Ala -1 | - | expression tag |
| Ser 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 12 |
| Total formula weight | 363851.3 | |
| Non-Polymers* | Number of molecules | 9 |
| Total formula weight | 2633.4 | |
| All* | Total formula weight | 366484.7 |
