8DR4
Open state of RFC:PCNA bound to a 3' ss/dsDNA junction (DNA2) without NTD
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | Replication factor C subunit 1 | polymer | 918 | 101689.1 | 1 | UniProt (P38630) Pfam (PF00533) Pfam (PF00004) Pfam (PF08519) | Saccharomyces cerevisiae (baker's yeast) | Replication factor C1,Activator 1 95 kDa subunit,Cell division control protein 44 |
| 2 | B (B) | Replication factor C subunit 4 | polymer | 323 | 36201.0 | 1 | UniProt (P40339) Pfam (PF00004) Pfam (PF08542) | Saccharomyces cerevisiae (baker's yeast) | Replication factor C4,Activator 1 37 kDa subunit |
| 3 | C (C) | Replication factor C subunit 3 | polymer | 340 | 38254.5 | 1 | UniProt (P38629) Pfam (PF00004) Pfam (PF08542) | Saccharomyces cerevisiae (baker's yeast) | Replication factor C3,Activator 1 40 kDa subunit |
| 4 | D (D) | Replication factor C subunit 2 | polymer | 353 | 39794.5 | 1 | UniProt (P40348) Pfam (PF08542) Pfam (PF00004) Pfam (PF21960) | Saccharomyces cerevisiae (baker's yeast) | Replication factor C2,Activator 1 41 kDa subunit |
| 5 | E (E) | Replication factor C subunit 5 | polymer | 354 | 39993.6 | 1 | UniProt (P38251) Pfam (PF13177) Pfam (PF21960) Pfam (PF22534) | Saccharomyces cerevisiae (baker's yeast) | Replication factor C5,Activator 1 40 kDa subunit |
| 6 | F, G, H (F, G, H) | Proliferating cell nuclear antigen | polymer | 277 | 30991.3 | 3 | UniProt (P15873) Pfam (PF00705) Pfam (PF02747) | Saccharomyces cerevisiae (baker's yeast) | PCNA |
| 7 | I (I) | DNA (5'-D(P*TP*TP*TP*CP*GP*GP*GP*GP*GP*GP*GP*CP*CP*GP*GP*GP*GP*GP*G)-3') | polymer | 19 | 6014.8 | 1 | Saccharomyces cerevisiae | ||
| 8 | J (J) | DNA (5'-D(P*CP*CP*CP*CP*CP*CP*GP*GP*CP*CP*CP*CP*CP*CP*CP*GP*GP*C)-3') | polymer | 18 | 5320.4 | 1 | Saccharomyces cerevisiae | ||
| 9 | K (K) | DNA (5'-D(P*AP*AP*GP*GP*GP*GP*GP*GP*GP*GP*GP*G)-3') | polymer | 12 | 3873.5 | 1 | Saccharomyces cerevisiae | ||
| 10 | L (L) | DNA (5'-D(P*CP*CP*CP*CP*CP*CP*CP*CP*CP*CP*TP*TP*T)-3') | polymer | 13 | 3759.4 | 1 | Saccharomyces cerevisiae | ||
| 11 | M, P, R, T (A, B, C, D) | PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER | non-polymer | 523.2 | 4 | Chemie (AGS) | |||
| 12 | N, O, Q, S (A, B, C, D) | MAGNESIUM ION | non-polymer | 24.3 | 4 | Chemie (MG) | |||
| 13 | U (E) | GUANOSINE-5'-DIPHOSPHATE | non-polymer | 443.2 | 1 | Chemie (GDP) |
Sequence modifications
A: 1 - 861 (UniProt: P38630)
F, G, H: 1 - 258 (UniProt: P15873)
| PDB | External Database | Details |
|---|---|---|
| Gly 862 | - | expression tag |
| Leu 863 | - | expression tag |
| Asn 864 | - | expression tag |
| Glu 865 | - | expression tag |
| Asn 866 | - | expression tag |
| Leu 867 | - | expression tag |
| Tyr 868 | - | expression tag |
| Phe 869 | - | expression tag |
| Gln 870 | - | expression tag |
| Gly 871 | - | expression tag |
| Gly 872 | - | expression tag |
| Gly 873 | - | expression tag |
| Asp 874 | - | expression tag |
| Tyr 875 | - | expression tag |
| Lys 876 | - | expression tag |
| Asp 877 | - | expression tag |
| Asp 878 | - | expression tag |
| Asp 879 | - | expression tag |
| Asp 880 | - | expression tag |
| Lys 881 | - | expression tag |
| Asp 882 | - | expression tag |
| Tyr 883 | - | expression tag |
| Lys 884 | - | expression tag |
| Asp 885 | - | expression tag |
| Asp 886 | - | expression tag |
| Asp 887 | - | expression tag |
| Asp 888 | - | expression tag |
| Lys 889 | - | expression tag |
| Asp 890 | - | expression tag |
| Tyr 891 | - | expression tag |
| Lys 892 | - | expression tag |
| Asp 893 | - | expression tag |
| Asp 894 | - | expression tag |
| Asp 895 | - | expression tag |
| Asp 896 | - | expression tag |
| Lys 897 | - | expression tag |
| Gly 898 | - | expression tag |
| Gly 899 | - | expression tag |
| Lys 900 | - | expression tag |
| Asp 901 | - | expression tag |
| His 902 | - | expression tag |
| Leu 903 | - | expression tag |
| Ile 904 | - | expression tag |
| His 905 | - | expression tag |
| Asn 906 | - | expression tag |
| Val 907 | - | expression tag |
| His 908 | - | expression tag |
| Lys 909 | - | expression tag |
| Glu 910 | - | expression tag |
| Glu 911 | - | expression tag |
| His 912 | - | expression tag |
| Ala 913 | - | expression tag |
| His 914 | - | expression tag |
| Ala 915 | - | expression tag |
| His 916 | - | expression tag |
| Asn 917 | - | expression tag |
| Lys 918 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Met -18 | - | expression tag |
| Gly -17 | - | expression tag |
| Ser -16 | - | expression tag |
| Ser -15 | - | expression tag |
| His -14 | - | expression tag |
| His -13 | - | expression tag |
| His -12 | - | expression tag |
| His -11 | - | expression tag |
| His -10 | - | expression tag |
| His -9 | - | expression tag |
| Ser -8 | - | expression tag |
| Ser -7 | - | expression tag |
| Gly -6 | - | expression tag |
| Leu -5 | - | expression tag |
| Val -4 | - | expression tag |
| Pro -3 | - | expression tag |
| Arg -2 | - | expression tag |
| Ala -1 | - | expression tag |
| Ser 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 12 |
| Total formula weight | 367874.8 | |
| Non-Polymers* | Number of molecules | 9 |
| Total formula weight | 2633.4 | |
| All* | Total formula weight | 370508.2 |
