8DQW
Open state of Rad24-RFC:9-1-1 bound to a 5' ss/dsDNA junction
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | B | Replication factor C subunit 4 | polymer | 323 | 36201.0 | 1 | UniProt (P40339) Pfam (PF00004) Pfam (PF08542) In PDB | Saccharomyces cerevisiae (baker's yeast) | Replication factor C4,Activator 1 37 kDa subunit |
| 2 | C | Replication factor C subunit 3 | polymer | 340 | 38254.5 | 1 | UniProt (P38629) Pfam (PF00004) Pfam (PF08542) In PDB | Saccharomyces cerevisiae (baker's yeast) | Replication factor C3,Activator 1 40 kDa subunit |
| 3 | D | Replication factor C subunit 2 | polymer | 353 | 39794.5 | 1 | UniProt (P40348) Pfam (PF00004) Pfam (PF21960) Pfam (PF08542) In PDB | Saccharomyces cerevisiae (baker's yeast) | Replication factor C2,Activator 1 41 kDa subunit |
| 4 | E | Replication factor C subunit 5 | polymer | 354 | 39993.6 | 1 | UniProt (P38251) Pfam (PF21960) Pfam (PF22534) Pfam (PF13177) In PDB | Saccharomyces cerevisiae (baker's yeast) | Replication factor C5,Activator 1 40 kDa subunit |
| 5 | F | DNA damage checkpoint control protein RAD17 | polymer | 401 | 45637.5 | 1 | UniProt (A0A8H4BW58) Pfam (PF02144) UniProt (by SIFTS) (P48581) In PDB | Saccharomyces cerevisiae (baker's yeast) | |
| 6 | G | DDC1 isoform 1 | polymer | 646 | 73850.7 | 1 | UniProt (A0A8H4BUG7) UniProt (by SIFTS) (Q08949) In PDB | Saccharomyces cerevisiae (baker's yeast) | |
| 7 | H | DNA damage checkpoint control protein MEC3 | polymer | 474 | 53207.8 | 1 | UniProt (Q02574) Pfam (PF04005) In PDB | Saccharomyces cerevisiae (baker's yeast) | |
| 8 | A | RAD24 isoform 1 | polymer | 696 | 80096.8 | 1 | UniProt (A0A8H8UM36) Pfam (PF03215) UniProt (by SIFTS) (P32641) In PDB | Saccharomyces cerevisiae (baker's yeast) | |
| 9 | J | DNA (50-MER) | polymer | 70 | 21507.7 | 1 | Saccharomyces cerevisiae | ||
| 10 | I | DNA (5'-D(P*CP*GP*TP*CP*CP*CP*TP*TP*CP*C)-3') | polymer | 20 | 5972.8 | 1 | Saccharomyces cerevisiae | ||
| 11 | B, C, D, A | MAGNESIUM ION | non-polymer | 24.3 | 4 | Chemie (MG) | |||
| 12 | B, C, D, A | PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER | non-polymer | 523.2 | 4 | Chemie (AGS) | |||
| 13 | E | GUANOSINE-5'-DIPHOSPHATE | non-polymer | 443.2 | 1 | Chemie (GDP) | |||
| 14 | water | water | 18.0 | 429 | Chemie (HOH) |
Sequence modifications
G: 1 - 612 (UniProt: A0A8H4BUG7)
A: 1 - 659 (UniProt: A0A8H8UM36)
| PDB | External Database | Details |
|---|---|---|
| Met -33 | - | initiating methionine |
| Asp -32 | - | expression tag |
| Tyr -31 | - | expression tag |
| Lys -30 | - | expression tag |
| Asp -29 | - | expression tag |
| Asp -28 | - | expression tag |
| Asp -27 | - | expression tag |
| Asp -26 | - | expression tag |
| Lys -25 | - | expression tag |
| Asp -24 | - | expression tag |
| Tyr -23 | - | expression tag |
| Lys -22 | - | expression tag |
| Asp -21 | - | expression tag |
| Asp -20 | - | expression tag |
| Asp -19 | - | expression tag |
| Asp -18 | - | expression tag |
| Lys -17 | - | expression tag |
| Asp -16 | - | expression tag |
| Tyr -15 | - | expression tag |
| Lys -14 | - | expression tag |
| Asp -13 | - | expression tag |
| Asp -12 | - | expression tag |
| Asp -11 | - | expression tag |
| Asp -10 | - | expression tag |
| Lys -9 | - | expression tag |
| Leu -8 | - | expression tag |
| Glu -7 | - | expression tag |
| Val -6 | - | expression tag |
| Leu -5 | - | expression tag |
| Phe -4 | - | expression tag |
| Gln -3 | - | expression tag |
| Gly -2 | - | expression tag |
| Pro -1 | - | expression tag |
| Gly 0 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Gly 660 | - | expression tag |
| Leu 661 | - | expression tag |
| Asn 662 | - | expression tag |
| Leu 663 | - | expression tag |
| Glu 664 | - | expression tag |
| Val 665 | - | expression tag |
| Leu 666 | - | expression tag |
| Phe 667 | - | expression tag |
| Gln 668 | - | expression tag |
| Gly 669 | - | expression tag |
| Pro 670 | - | expression tag |
| Gly 671 | - | expression tag |
| Gly 672 | - | expression tag |
| Asp 673 | - | expression tag |
| Tyr 674 | - | expression tag |
| Lys 675 | - | expression tag |
| Asp 676 | - | expression tag |
| Asp 677 | - | expression tag |
| Asp 678 | - | expression tag |
| Asp 679 | - | expression tag |
| Lys 680 | - | expression tag |
| Asp 681 | - | expression tag |
| Tyr 682 | - | expression tag |
| Lys 683 | - | expression tag |
| Asp 684 | - | expression tag |
| Asp 685 | - | expression tag |
| Asp 686 | - | expression tag |
| Asp 687 | - | expression tag |
| Lys 688 | - | expression tag |
| Asp 689 | - | expression tag |
| Tyr 690 | - | expression tag |
| Lys 691 | - | expression tag |
| Asp 692 | - | expression tag |
| Asp 693 | - | expression tag |
| Asp 694 | - | expression tag |
| Asp 695 | - | expression tag |
| Lys 696 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 10 |
| Total formula weight | 434517.0 | |
| Non-Polymers* | Number of molecules | 9 |
| Total formula weight | 2633.4 | |
| All* | Total formula weight | 437150.4 |
