8DMS
Crystal structure of Legionella pneumophila macrodomain MavL in complex with ubiquitin vinyl methyl ester soaked with ADP-ribose
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B (A, B) | MavL | polymer | 399 | 44180.7 | 2 | UniProt (Q5ZSJ1) Pfam (PF24754) | Legionella pneumophila | |
| 2 | C, D (C, D) | Ubiquitin | polymer | 75 | 8519.8 | 2 | UniProt (P0CG47) Pfam (PF00240) | Homo sapiens (human) | |
| 3 | E (B) | [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE | non-polymer | 559.3 | 1 | Chemie (AR6) PubChem (192) PubChem (25113622) PubChem (25113623) PubChem (44415180) PubChem (51051599) PubChem (44144391) PubChem (445794) PubChem (447048) PubChem (89379870) PubChem (33576) PubChem (447165) PubChem (448826) PubChem (91746164) PubChem (9548001) PubChem (9547960) PubChem (122606931) PubChem (122609061) PubChem (10437766) PubChem (174159053) PubChem (140853820) PubChem (146879505) PubChem (162774256) PubChem (162782217) PubChem (163972867) PubChem (173750345) PubChem (173750346) PubChem (175675949) | |||
| 4 | F (C) | PENTAETHYLENE GLYCOL | non-polymer | 238.3 | 1 | Chemie (1PE) PubChem (62551) | |||
| 5 | G, H (C, D) | METHYL 4-AMINOBUTANOATE | non-polymer | 117.1 | 2 | Chemie (GVE) PubChem (18614) | |||
| 6 | I (D) | CITRATE ANION | non-polymer | 189.1 | 1 | Chemie (FLC) PubChem (31348) | |||
| 7 | J, K, L, M (A, B, C, D) | water | water | 18.0 | 608 | Chemie (HOH) |
Sequence modifications
A, B: 42 - 435 (UniProt: Q5ZSJ1)
| PDB | External Database | Details |
|---|---|---|
| Gly 37 | - | expression tag |
| Pro 38 | - | expression tag |
| Leu 39 | - | expression tag |
| Gly 40 | - | expression tag |
| Ser 41 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 4 |
| Total formula weight | 105400.9 | |
| Non-Polymers* | Number of molecules | 5 |
| Total formula weight | 1221.0 | |
| All* | Total formula weight | 106621.9 |
