8DML
Vibrio parahaemolyticus VtrA/VtrC complex bound to the bile salt chenodeoxycholate
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, C, E, G (A, C, E, G) | VtrA | polymer | 94 | 10982.5 | 4 | UniProt (Q87GI4) Pfam (PF22100) | Vibrio parahaemolyticus | |
| 2 | B, D, F, H (B, D, F, H) | VtrC | polymer | 144 | 16918.8 | 4 | UniProt (Q87GI3) Pfam (PF22280) | Vibrio parahaemolyticus | |
| 3 | BA, I, K, N, O... (H, A, B, C, D) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 8 | Chemie (EDO) | |||
| 4 | J, Q, V, Y (B, D, F, H) | CHENODEOXYCHOLIC ACID | non-polymer | 392.6 | 4 | Chemie (JN3) | |||
| 5 | L, S, W, Z (B, D, F, H) | TETRAETHYLENE GLYCOL | non-polymer | 194.2 | 4 | Chemie (PG4) | |||
| 6 | AA, M, T, X (H, B, D, F) | CALCIUM ION | non-polymer | 40.1 | 4 | Chemie (CA) | |||
| 7 | CA, DA, EA, FA, GA... (A, B, C, D, E...) | water | water | 18.0 | 260 | Chemie (HOH) |
Sequence modifications
A, C, E, G: 161 - 253 (UniProt: Q87GI4)
B, D, F, H: 31 - 161 (UniProt: Q87GI3)
| PDB | External Database | Details |
|---|---|---|
| Met 160 | - | initiating methionine |
| PDB | External Database | Details |
|---|---|---|
| Met 18 | - | initiating methionine |
| Gly 19 | - | expression tag |
| Ser 20 | - | expression tag |
| Ser 21 | - | expression tag |
| His 22 | - | expression tag |
| His 23 | - | expression tag |
| His 24 | - | expression tag |
| His 25 | - | expression tag |
| His 26 | - | expression tag |
| His 27 | - | expression tag |
| Ser 28 | - | expression tag |
| Gln 29 | - | expression tag |
| Asp 30 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 8 |
| Total formula weight | 111605.0 | |
| Non-Polymers* | Number of molecules | 20 |
| Total formula weight | 3004.0 | |
| All* | Total formula weight | 114609.1 |
