8DCC
SARS-CoV-2 Receptor-Binding Domain SPEEDesign Immunogen 3 Bound to P2B-2F6 Fab
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | E | Spike protein S1 | polymer | 211 | 23684.4 | 1 | UniProt (P0DTC2) Pfam (PF09408) In PDB | Severe acute respiratory syndrome coronavirus 2 | |
2 | L | P2B-2F6 Fab light chain | polymer | 216 | 22687.0 | 1 | Homo sapiens (human) | ||
3 | H | P2B-2F6 Fab heavy chain | polymer | 242 | 25600.8 | 1 | Homo sapiens (human) | ||
4 | E | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 1 | Chemie (NAG) | |||
5 | water | water | 18.0 | 31 | Chemie (HOH) |
Sequence modifications
E: 333 - 526 (UniProt: P0DTC2)
PDB | External Database | Details |
---|---|---|
Glu 330 | - | expression tag |
Thr 331 | - | expression tag |
Gly 332 | - | expression tag |
Lys 333 | Thr 333 | engineered mutation |
Tyr 363 | Ala 363 | engineered mutation |
Lys 388 | Asn 388 | engineered mutation |
Tyr 394 | Asn 394 | engineered mutation |
Thr 468 | Ile 468 | engineered mutation |
Thr 514 | Ser 514 | engineered mutation |
Asp 519 | His 519 | engineered mutation |
Pro 522 | Ala 522 | engineered mutation |
Gly 527 | - | expression tag |
Thr 528 | - | expression tag |
Gly 529 | - | expression tag |
Gly 530 | - | expression tag |
Gly 531 | - | expression tag |
Gly 532 | - | expression tag |
Ser 533 | - | expression tag |
Lys 534 | - | expression tag |
His 535 | - | expression tag |
His 536 | - | expression tag |
His 537 | - | expression tag |
His 538 | - | expression tag |
His 539 | - | expression tag |
His 540 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 3 |
Total formula weight | 71972.2 | |
Non-Polymers* | Number of molecules | 1 |
Total formula weight | 221.2 | |
All* | Total formula weight | 72193.4 |