8DAD
SARS-CoV-2 receptor binding domain in complex with AZ090 Fab
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | H | AZ090 Fab Heavy Chain | polymer | 123 | 13793.6 | 1 | Homo sapiens | ||
| 2 | L | AZ090 Fab Light Chain | polymer | 107 | 11781.2 | 1 | Homo sapiens | ||
| 3 | B | Spike glycoprotein | polymer | 1256 | 139344.4 | 1 | UniProt (P0DTC2) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601) In PDB | Severe acute respiratory syndrome coronavirus 2 | S glycoprotein,E2,Peplomer protein |
| 4 | J, A | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 2 | In PDB GlyTouCan (G42666HT) |
Sequence modifications
B: 1 - 1210 (UniProt: P0DTC2)
| PDB | External Database | Details |
|---|---|---|
| - | Arg 682 | deletion |
| - | Arg 683 | deletion |
| - | Arg 685 | deletion |
| Pro 814 | Phe 817 | engineered mutation |
| Pro 889 | Ala 892 | engineered mutation |
| Pro 896 | Ala 899 | engineered mutation |
| Pro 939 | Ala 942 | engineered mutation |
| Pro 983 | Lys 986 | engineered mutation |
| Pro 984 | Val 987 | engineered mutation |
| Ser 1211 | - | expression tag |
| Gly 1212 | - | expression tag |
| Arg 1213 | - | expression tag |
| Leu 1214 | - | expression tag |
| Val 1215 | - | expression tag |
| Pro 1216 | - | expression tag |
| Arg 1217 | - | expression tag |
| Gly 1218 | - | expression tag |
| Ser 1219 | - | expression tag |
| Pro 1220 | - | expression tag |
| Gly 1221 | - | expression tag |
| Ser 1222 | - | expression tag |
| Gly 1223 | - | expression tag |
| Tyr 1224 | - | expression tag |
| Ile 1225 | - | expression tag |
| Pro 1226 | - | expression tag |
| Glu 1227 | - | expression tag |
| Ala 1228 | - | expression tag |
| Pro 1229 | - | expression tag |
| Arg 1230 | - | expression tag |
| Asp 1231 | - | expression tag |
| Gly 1232 | - | expression tag |
| Gln 1233 | - | expression tag |
| Ala 1234 | - | expression tag |
| Tyr 1235 | - | expression tag |
| Val 1236 | - | expression tag |
| Arg 1237 | - | expression tag |
| Lys 1238 | - | expression tag |
| Asp 1239 | - | expression tag |
| Gly 1240 | - | expression tag |
| Glu 1241 | - | expression tag |
| Trp 1242 | - | expression tag |
| Val 1243 | - | expression tag |
| Leu 1244 | - | expression tag |
| Leu 1245 | - | expression tag |
| Ser 1246 | - | expression tag |
| Thr 1247 | - | expression tag |
| Phe 1248 | - | expression tag |
| Leu 1249 | - | expression tag |
| Gly 1250 | - | expression tag |
| His 1251 | - | expression tag |
| His 1252 | - | expression tag |
| His 1253 | - | expression tag |
| His 1254 | - | expression tag |
| His 1255 | - | expression tag |
| His 1256 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 164919.2 | |
| Branched | Number of molecules | 2 |
| Total formula weight | 848.8 | |
| All* | Total formula weight | 165768.0 |
