8D8K
Yeast mitochondrial small subunit assembly intermediate (State 2)
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (0) | Probable S-adenosyl-L-methionine-dependent RNA methyltransferase RSM22, mitochondrial | polymer | 628 | 72308.3 | 1 | UniProt (P36056) Pfam (PF09243) | Saccharomyces cerevisiae (baker's yeast) | |
| 2 | B (5) | 37S ribosomal protein MRP13, mitochondrial | polymer | 339 | 39045.0 | 1 | UniProt (P12686) | Saccharomyces cerevisiae (baker's yeast) | Mitochondrial small ribosomal subunit protein mS44,YmS-A |
| 3 | C (C) | Ribosomal protein VAR1, mitochondrial | polymer | 398 | 47171.0 | 1 | UniProt (P02381) Pfam (PF05316) | Saccharomyces cerevisiae (baker's yeast) | Mitochondrial small ribosomal subunit protein uS3m |
| 4 | D (d) | Mitochondrial group I intron splicing factor CCM1 | polymer | 864 | 101568.5 | 1 | UniProt (A0A8H4FBQ6) Pfam (PF01535) UniProt (by SIFTS) (P48237) | Saccharomyces cerevisiae (baker's yeast) | |
| 5 | E (M) | 37S ribosomal protein SWS2, mitochondrial | polymer | 143 | 16121.0 | 1 | UniProt (P53937) Pfam (PF00416) | Saccharomyces cerevisiae (baker's yeast) | Mitochondrial small ribosomal subunit protein uS13m,Sick without securin protein 2 |
| 6 | F (N) | 37S ribosomal protein MRP2, mitochondrial | polymer | 115 | 13563.1 | 1 | UniProt (P10663) Pfam (PF00253) | Saccharomyces cerevisiae (baker's yeast) | Mitochondrial small ribosomal subunit protein uS14m |
| 7 | G (O) | 37S ribosomal protein S28, mitochondrial | polymer | 286 | 33116.4 | 1 | UniProt (P21771) Pfam (PF00312) | Saccharomyces cerevisiae (baker's yeast) | Mitochondrial small ribosomal subunit protein uS15m |
| 8 | H (P) | 37S ribosomal protein S16, mitochondrial | polymer | 121 | 13663.0 | 1 | UniProt (Q02608) Pfam (PF00886) | Saccharomyces cerevisiae (baker's yeast) | Mitochondrial small ribosomal subunit protein bS16m |
| 9 | I (Q) | 37S ribosomal protein S17, mitochondrial | polymer | 237 | 27684.0 | 1 | UniProt (Q03246) Pfam (PF00366) | Saccharomyces cerevisiae (baker's yeast) | Mitochondrial small ribosomal subunit protein uS17m |
| 10 | J (R) | 37S ribosomal protein RSM18, mitochondrial | polymer | 138 | 15866.5 | 1 | UniProt (P40033) Pfam (PF01084) | Saccharomyces cerevisiae (baker's yeast) | Mitochondrial small ribosomal subunit protein bS18m |
| 11 | K (S) | 37S ribosomal protein S19, mitochondrial | polymer | 91 | 10292.0 | 1 | UniProt (P53733) Pfam (PF00203) | Saccharomyces cerevisiae (baker's yeast) | Mitochondrial small ribosomal subunit protein uS19m |
| 12 | L (T) | 37S ribosomal protein MRP21, mitochondrial | polymer | 177 | 20432.7 | 1 | UniProt (P38175) Pfam (PF01165) | Saccharomyces cerevisiae (baker's yeast) | Mitochondrial small ribosomal subunit protein bS21m |
| 13 | M (U) | 37S ribosomal protein S25, mitochondrial | polymer | 264 | 30554.4 | 1 | UniProt (P40496) Pfam (PF13741) | Saccharomyces cerevisiae (baker's yeast) | Mitochondrial small ribosomal subunit protein mS23 |
| 14 | N (V) | 37S ribosomal protein PET123, mitochondrial | polymer | 318 | 36059.3 | 1 | UniProt (P17558) | Saccharomyces cerevisiae (baker's yeast) | Mitochondrial small ribosomal subunit protein mS26 |
| 15 | O (W) | 37S ribosomal protein S23, mitochondrial | polymer | 450 | 50940.7 | 1 | UniProt (Q01163) Pfam (PF10236) | Saccharomyces cerevisiae (baker's yeast) | DAP-3,Mitochondrial small ribosomal subunit protein mS29 |
| 16 | P (X) | Mitochondrial 37S ribosomal protein S27 | polymer | 110 | 12420.7 | 1 | UniProt (P53305) Pfam (PF08293) | Saccharomyces cerevisiae (baker's yeast) | Mitochondrial small ribosomal subunit protein mS33 |
| 17 | Q (Y) | 37S ribosomal protein S24, mitochondrial | polymer | 319 | 37458.5 | 1 | UniProt (Q03976) Pfam (PF10213) | Saccharomyces cerevisiae (baker's yeast) | Mitochondrial ribosomal small subunit protein 24,Mitochondrial small ribosomal subunit protein mS35 |
| 18 | R (Z) | 37S ribosomal protein MRP10, mitochondrial | polymer | 95 | 10709.6 | 1 | UniProt (O75012) Pfam (PF06747) | Saccharomyces cerevisiae (baker's yeast) | Mitochondrial small ribosomal subunit protein mS37,YmS-T |
| 19 | S (A) | 37S ribosomal protein MRP51, mitochondrial | polymer | 344 | 39507.5 | 1 | UniProt (Q02950) Pfam (PF11709) | Saccharomyces cerevisiae (baker's yeast) | Mitochondrial small ribosomal subunit protein bS1m |
| 20 | T (B) | 37S ribosomal protein MRP4, mitochondrial | polymer | 394 | 44205.7 | 1 | UniProt (P32902) Pfam (PF00318) | Saccharomyces cerevisiae (baker's yeast) | Mitochondrial small ribosomal subunit protein uS2m |
| 21 | U (2) | Protein FYV4, mitochondrial | polymer | 130 | 15321.7 | 1 | UniProt (P38783) Pfam (PF09597) | Saccharomyces cerevisiae (baker's yeast) | Function required for yeast viability protein 4,Mitochondrial small ribosomal subunit protein mS41 |
| 22 | V (3) | 37S ribosomal protein S26, mitochondrial | polymer | 266 | 30257.4 | 1 | UniProt (P47141) Pfam (PF02777) | Saccharomyces cerevisiae (baker's yeast) | Mitochondrial small ribosomal subunit protein mS42 |
| 23 | W (D) | 37S ribosomal protein NAM9, mitochondrial | polymer | 486 | 56450.9 | 1 | UniProt (P27929) Pfam (PF01479) | Saccharomyces cerevisiae (baker's yeast) | Mitochondrial small ribosomal subunit protein uS4m,Nuclear accommodation of mitochondria protein 9 |
| 24 | X (4) | 37S ribosomal protein MRP1, mitochondrial | polymer | 321 | 36775.8 | 1 | UniProt (P10662) | Saccharomyces cerevisiae (baker's yeast) | Mitochondrial small ribosomal subunit protein mS43 |
| 25 | Y (E) | 37S ribosomal protein S5, mitochondrial | polymer | 307 | 34941.1 | 1 | UniProt (P33759) Pfam (PF00333) Pfam (PF03719) | Saccharomyces cerevisiae (baker's yeast) | Mitochondrial small ribosomal subunit protein uS5m |
| 26 | Z (F) | 37S ribosomal protein MRP17, mitochondrial | polymer | 131 | 15046.7 | 1 | UniProt (P28778) Pfam (PF01250) | Saccharomyces cerevisiae (baker's yeast) | Mitochondrial small ribosomal subunit protein bS6m,YmS16 |
| 27 | AA (6) | 37S ribosomal protein S35, mitochondrial | polymer | 345 | 39638.2 | 1 | UniProt (P53292) Pfam (PF12298) | Saccharomyces cerevisiae (baker's yeast) | Mitochondrial small ribosomal subunit protein mS45 |
| 28 | BA (G) | 37S ribosomal protein S7, mitochondrial | polymer | 247 | 27857.1 | 1 | UniProt (P47150) Pfam (PF00177) | Saccharomyces cerevisiae (baker's yeast) | Mitochondrial small ribosomal subunit protein uS7m |
| 29 | CA (H) | 37S ribosomal protein S8, mitochondrial | polymer | 155 | 17496.6 | 1 | UniProt (Q03799) Pfam (PF00410) | Saccharomyces cerevisiae (baker's yeast) | Mitochondrial small ribosomal subunit protein uS8m |
| 30 | DA (I) | 37S ribosomal protein S9, mitochondrial | polymer | 278 | 31980.3 | 1 | UniProt (P38120) Pfam (PF00380) | Saccharomyces cerevisiae (baker's yeast) | Mitochondrial small ribosomal subunit protein uS9m |
| 31 | EA (a) | 15S ribosomal RNA | polymer | 1713 | 549234.1 | 1 | GenBank (1887067169) | Saccharomyces cerevisiae (baker's yeast) | |
| 32 | FA (J) | 37S ribosomal protein S10, mitochondrial | polymer | 203 | 23458.9 | 1 | UniProt (Q03201) Pfam (PF00338) | Saccharomyces cerevisiae (baker's yeast) | Mitochondrial small ribosomal subunit protein uS10m |
| 33 | GA (K) | 37S ribosomal protein S18, mitochondrial | polymer | 217 | 24603.4 | 1 | UniProt (P42847) | Saccharomyces cerevisiae (baker's yeast) | Mitochondrial small ribosomal subunit protein uS11m,YmS18 |
| 34 | HA (c) | unknown protein sequence | polymer | 94 | 8017.9 | 1 | Saccharomyces cerevisiae (baker's yeast) | ||
| 35 | IA (L) | MRPS12 isoform 1 | polymer | 153 | 16948.7 | 1 | UniProt (A0A6A5Q5F6) Pfam (PF00164) UniProt (by SIFTS) (P53732) | Saccharomyces cerevisiae (baker's yeast) | |
| 36 | JA (0) | IRON/SULFUR CLUSTER | non-polymer | 351.6 | 1 | Chemie (SF4) | |||
| 37 | AB, AC, AD, BB, BC... (a, Q, W, B) | MAGNESIUM ION | non-polymer | 24.3 | 72 | Chemie (MG) | |||
| 38 | LA (W) | ADENOSINE-5'-TRIPHOSPHATE | non-polymer | 507.2 | 1 | Chemie (ATP) | |||
| 39 | FD (W) | water | water | 18.0 | 3 | Chemie (HOH) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 35 |
| Total formula weight | 1600716.8 | |
| Non-Polymers* | Number of molecules | 74 |
| Total formula weight | 2608.8 | |
| All* | Total formula weight | 1603325.6 |
