8D88

Structure of Y430F D-ornithine/D-lysine decarboxylase complex with D-lysine

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A, B	D-ornithine/D-lysine decarboxylase	polymer	478	54118.1	2	UniProt (Q8ZNC4) Pfam (PF00278) Pfam (PF02784) In PDB	Salmonella enterica subsp. enterica serovar Typhimurium	D-Orn/D-Lys decarboxylase,DOKDC
2	A, B	DIMETHYL SULFOXIDE	non-polymer		78.1	6	Chemie (DMS)
3	A, B	1,2-ETHANEDIOL	non-polymer		62.1	2	Chemie (EDO)
4	A	PENTANE-1,5-DIAMINE	non-polymer		102.2	1	Chemie (N2P)
5	A, B	N~2~-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)-D-lysine	non-polymer		377.3	2	Chemie (R1O)
6	A, B	SODIUM ION	non-polymer		23.0	4	Chemie (NA)
7	A, B	CHLORIDE ION	non-polymer		35.5	2	Chemie (CL)
8	B	GLYCEROL	non-polymer		92.1	1	Chemie (GOL)
9		water	water		18.0	1012	Chemie (HOH)

Sequence modifications

A, B: 1 - 465 (UniProt: Q8ZNC4)

PDB	External Database	Details
Phe 430	Tyr 430	engineered mutation
Leu 466	-	expression tag
Ala 478	-	expression tag
Ala 479	-	expression tag
Ala 480	-	expression tag
Leu 481	-	expression tag
Glu 482	-	expression tag
His 483	-	expression tag
His 484	-	expression tag
His 485	-	expression tag
His 486	-	expression tag
His 487	-	expression tag
His 488	-	expression tag
Ala 489	-	expression tag

Contents of the asymmetric unit

Polymers	Number of chains	2
	Total formula weight	108236.1
Non-Polymers*	Number of molecules	18
	Total formula weight	1704.7
All*	Total formula weight	109940.9

*Water molecules are not included.