8D5D

Structure of Y430F D-ornithine/D-lysine decarboxylase complex with D-arginine

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A, B (A, B)	D-ornithine/D-lysine decarboxylase	polymer	477	54047.0	2	UniProt (Q8ZNC4) Pfam (PF00278) Pfam (PF02784)	Salmonella enterica subsp. enterica serovar Typhimurium	D-Orn/D-Lys decarboxylase,DOKDC
2	C, D, E, F, K... (A, B)	DIMETHYL SULFOXIDE	non-polymer		78.1	7	Chemie (DMS)
3	G, N (A, B)	(E)-N~2~-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene)-D-arginine	non-polymer		403.3	2	Chemie (5DK)
4	H, J (A, B)	GLYCEROL	non-polymer		92.1	2	Chemie (GOL)
5	I, O (A, B)	SODIUM ION	non-polymer		23.0	2	Chemie (NA)
6	P, Q (A, B)	water	water		18.0	824	Chemie (HOH)

Sequence modifications

A, B: 1 - 465 (UniProt: Q8ZNC4)

PDB	External Database	Details
Phe 430	Tyr 430	engineered mutation
Leu 466	-	expression tag
Ala 467	-	expression tag
Ala 478	-	expression tag
Ala 479	-	expression tag
Leu 480	-	expression tag
Glu 481	-	expression tag
His 482	-	expression tag
His 483	-	expression tag
His 484	-	expression tag
His 485	-	expression tag
His 486	-	expression tag
His 487	-	expression tag

Contents of the asymmetric unit

Polymers	Number of chains	2
	Total formula weight	108094.0
Non-Polymers*	Number of molecules	13
	Total formula weight	1583.8
All*	Total formula weight	109677.7

*Water molecules are not included.