8CYA
SARS-CoV-2 Spike protein in complex with a pan-sarbecovirus nanobody 2-67
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | B, A, C | Spike glycoprotein | polymer | 1273 | 141263.3 | 3 | UniProt (P0DTC2) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601) In PDB | Severe acute respiratory syndrome coronavirus 2 (2019-nCoV SARS-CoV-2) | S glycoprotein,E2,Peplomer protein |
2 | D, E, F | pan-sarbecovirus nanobody 2-67 | polymer | 127 | 14016.6 | 3 | Lama glama | ||
3 | G, H, I, J, O... | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 14 | In PDB GlyTouCan (G15407YE) | |||
4 | K, L, M, N | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 4 | In PDB GlyTouCan (G42666HT) | |||
5 | P, X | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 570.5 | 2 | In PDB GlyTouCan (G21290RB) | |||
6 | B, C, A | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 32 | Chemie (NAG) |
Sequence modifications
B, A, C: 1 - 1273 (UniProt: P0DTC2)
PDB | External Database | Details |
---|---|---|
Pro 986 | Lys 986 | conflict |
Pro 987 | Val 987 | conflict |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 6 |
Total formula weight | 465839.7 | |
Branched | Number of molecules | 20 |
Total formula weight | 11050.3 | |
Non-Polymers* | Number of molecules | 32 |
Total formula weight | 7078.7 | |
All* | Total formula weight | 483968.7 |