8CWI
Fab arm of antibody 10G4 bound to CoV-2 receptor binding domain (RBD)
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A (A) | Spike protein S1 | polymer | 204 | 22975.7 | 1 | UniProt (P0DTC2) Pfam (PF09408) | Severe acute respiratory syndrome coronavirus 2 | |
2 | B (H) | Heavy chain of Fab arm of antibody 10G4 | polymer | 228 | 24475.3 | 1 | Homo sapiens (Human) | ||
3 | C (L) | Light chain of Fab arm of antibody 10G4 | polymer | 215 | 23591.2 | 1 | Homo sapiens (Human) | ||
4 | D (B) | alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1057.0 | 1 | In PDB GlyTouCan (G82348BZ) | |||
5 | E (C) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 570.5 | 1 | In PDB GlyTouCan (G21290RB) | |||
6 | F, I (A, L) | MAGNESIUM ION | non-polymer | 24.3 | 2 | Chemie (MG) | |||
7 | G, H, J (H, L) | CHLORIDE ION | non-polymer | 35.5 | 3 | Chemie (CL) | |||
8 | K, L, M (A, H, L) | water | water | 18.0 | 667 | Chemie (HOH) |
Sequence modifications
A: 333 - 528 (UniProt: P0DTC2)
PDB | External Database | Details |
---|---|---|
Gly 529 | - | expression tag |
Ser 530 | - | expression tag |
His 531 | - | expression tag |
His 532 | - | expression tag |
His 533 | - | expression tag |
His 534 | - | expression tag |
His 535 | - | expression tag |
His 536 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 3 |
Total formula weight | 71042.2 | |
Branched | Number of molecules | 2 |
Total formula weight | 1627.5 | |
Non-Polymers* | Number of molecules | 5 |
Total formula weight | 155.0 | |
All* | Total formula weight | 72824.7 |