8CMC
Human Leukocyte Antigen class II allotype DR1 presenting SARS-CoV-2 Spike peptide S511-530
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | HLA class II histocompatibility antigen, DR alpha chain | polymer | 183 | 21287.1 | 1 | UniProt (P01903) Pfam (PF00993) Pfam (PF07654) | Homo sapiens (human) | MHC class II antigen DRA |
| 2 | B (B) | Human leukocyte antigen DR beta chain allotype DR1 (DRB1*0101) | polymer | 194 | 22487.2 | 1 | Pfam (PF00969) Pfam (PF07654) UniProt (by SIFTS) (D7RIG0) | Homo sapiens | |
| 3 | C (C) | Spike protein S2' | polymer | 20 | 2099.5 | 1 | UniProt (P0DTC2) | Severe acute respiratory syndrome coronavirus 2 | SARS-Cov-2 Spike epitope S511-530 |
| 4 | D, E, F, G, H... (A, B) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 15 | Chemie (EDO) | |||
| 5 | K, L (A) | SULFATE ION | non-polymer | 96.1 | 2 | Chemie (SO4) | |||
| 6 | U (B) | 2-(N-MORPHOLINO)-ETHANESULFONIC ACID | non-polymer | 195.2 | 1 | Chemie (MES) | |||
| 7 | V, W, X (A, B, C) | water | water | 18.0 | 287 | Chemie (HOH) |
Sequence modifications
A: 1 - 182 (UniProt: P01903)
| PDB | External Database | Details |
|---|---|---|
| Met 0 | - | initiating methionine |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 45873.8 | |
| Non-Polymers* | Number of molecules | 18 |
| Total formula weight | 1318.4 | |
| All* | Total formula weight | 47192.2 |
