8CM4
W-formate dehydrogenase C872A from Desulfovibrio vulgaris - exposed to oxygen
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, C (A, C) | Formate dehydrogenase, alpha subunit, selenocysteine-containing | polymer | 1013 | 112405.0 | 2 | UniProt (Q72EJ1) Pfam (PF04879) Pfam (PF00384) Pfam (PF01568) | Desulfovibrio vulgaris str. Hildenborough | |
| 2 | B, D (B, D) | Formate dehydrogenase, beta subunit, putative | polymer | 215 | 23989.5 | 2 | UniProt (Q72EJ0) Pfam (PF13247) | Desulfovibrio vulgaris str. Hildenborough | |
| 3 | E, F, Q, R (A, C) | 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE | non-polymer | 740.6 | 4 | Chemie (MGD) | |||
| 4 | G, M, N, O, S... (A, B, C, D) | IRON/SULFUR CLUSTER | non-polymer | 351.6 | 8 | Chemie (SF4) | |||
| 5 | H, J, K, T (A, C) | GLYCEROL | non-polymer | 92.1 | 4 | Chemie (GOL) | |||
| 6 | I, U (A, C) | TUNGSTEN ION | non-polymer | 183.8 | 2 | Chemie (W) | |||
| 7 | L, V (A, C) | HYDROSULFURIC ACID | non-polymer | 34.1 | 2 | Chemie (H2S) | |||
| 8 | P (B) | NITRATE ION | non-polymer | 62.0 | 1 | Chemie (NO3) | |||
| 9 | Z (D) | DI(HYDROXYETHYL)ETHER | non-polymer | 106.1 | 1 | Chemie (PEG) | |||
| 10 | AA, BA, CA, DA (A, B, C, D) | water | water | 18.0 | 356 | Chemie (HOH) |
Sequence modifications
A, C: 1 - 1005 (UniProt: Q72EJ1)
| PDB | External Database | Details |
|---|---|---|
| Ala 872 | Cys 872 | engineered mutation |
| Trp 1006 | - | expression tag |
| Ser 1007 | - | expression tag |
| His 1008 | - | expression tag |
| Pro 1009 | - | expression tag |
| Gln 1010 | - | expression tag |
| Phe 1011 | - | expression tag |
| Glu 1012 | - | expression tag |
| Lys 1013 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 4 |
| Total formula weight | 272788.9 | |
| Non-Polymers* | Number of molecules | 22 |
| Total formula weight | 6747.7 | |
| All* | Total formula weight | 279536.6 |
