8CDO
PBP AccA-F144YG440Q from A. tumefaciens Bo542 in complex with agrocinopine C-like
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | Agrocinopine utilization periplasmic binding protein AccA | polymer | 498 | 56380.8 | 1 | UniProt (A0A2P0QK24) Pfam (PF00496) UniProt (by SIFTS) (A5WYD2) | Agrobacterium tumefaciens | |
| 2 | B, C (B, C) | beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose | branched | 342.3 | 2 | In PDB BIRD (PRD_002547) BIRD (PRD_002548) | |||
| 3 | D (A) | TETRAETHYLENE GLYCOL | non-polymer | 194.2 | 1 | Chemie (PG4) | |||
| 4 | E (A) | DI(HYDROXYETHYL)ETHER | non-polymer | 106.1 | 1 | Chemie (PEG) | |||
| 5 | F, G, H, I, J... (A) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 9 | Chemie (EDO) | |||
| 6 | O (A) | TRIETHYLENE GLYCOL | non-polymer | 150.2 | 1 | Chemie (PGE) | |||
| 7 | P (A) | 2-O-phosphono-beta-D-glucopyranose | non-polymer | 260.1 | 1 | BIRD (PRD_002548) Chemie (BNX) | |||
| 8 | Q (A) | 2-O-phosphono-alpha-D-glucopyranose | non-polymer | 260.1 | 1 | BIRD (PRD_002547) Chemie (ALX) | |||
| 9 | R (A) | water | water | 18.0 | 616 | Chemie (HOH) |
Sequence modifications
A: 31 - 521 (UniProt: A0A2P0QK24)
| PDB | External Database | Details |
|---|---|---|
| Met 30 | - | initiating methionine |
| Tyr 145 | Phe 136 | engineered mutation |
| Gln 440 | Gly 431 | engineered mutation |
| His 522 | - | expression tag |
| His 523 | - | expression tag |
| His 524 | - | expression tag |
| His 525 | - | expression tag |
| His 526 | - | expression tag |
| His 527 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 1 |
| Total formula weight | 56380.8 | |
| Branched | Number of molecules | 2 |
| Total formula weight | 684.6 | |
| Non-Polymers* | Number of molecules | 14 |
| Total formula weight | 1529.4 | |
| All* | Total formula weight | 58594.8 |
