8CBK
Structure of human mitochondrial RNase P in complex with mitochondrial pre-tRNA-His(5,Ser)
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B, C, D | 3-hydroxyacyl-CoA dehydrogenase type-2 | polymer | 261 | 26947.0 | 4 | UniProt (Q99714) Pfam (PF00106) In PDB | Homo sapiens (human) | 17-beta-estradiol 17-dehydrogenase,2-methyl-3-hydroxybutyryl-CoA dehydrogenase,MHBD,3-alpha-(17-beta)-hydroxysteroid dehydrogenase (NAD(+)),3-hydroxy-2-methylbutyryl-CoA dehydrogenase,3-hydroxyacyl-CoA dehydrogenase type II,3alpha(or 20beta)-hydroxysteroid dehydrogenase,7-alpha-hydroxysteroid dehydrogenase,Endoplasmic reticulum-associated amyloid beta-peptide-binding protein,Mitochondrial ribonuclease P protein 2,Mitochondrial RNase P protein 2,Short chain dehydrogenase/reductase family 5C member 1,Short-chain type dehydrogenase/reductase XH98G2,Type II HADH |
2 | E | Mitochondrial ribonuclease P catalytic subunit | polymer | 533 | 61564.4 | 1 | UniProt (O15091) Pfam (PF16953) In PDB | Homo sapiens (human) | Mitochondrial ribonuclease P protein 3,Mitochondrial RNase P protein 3,Protein only RNase P catalytic subunit |
3 | F | tRNA methyltransferase 10 homolog C | polymer | 408 | 48007.8 | 1 | UniProt (Q7L0Y3) Pfam (PF01746) In PDB | Homo sapiens (human) | HBV pre-S2 trans-regulated protein 2,Mitochondrial ribonuclease P protein 1,Mitochondrial RNase P protein 1,RNA (guanine-9-)-methyltransferase domain-containing protein 1,Renal carcinoma antigen NY-REN-49,mRNA methyladenosine-N(1)-methyltransferase,tRNA (adenine(9)-N(1))-methyltransferase,tRNA (guanine(9)-N(1))-methyltransferase |
4 | T | Mitochondrial Precursor tRNA-His(5,Ser) | polymer | 93 | 29764.6 | 1 | Homo sapiens (Human) | ||
5 | A, B, C, D | NICOTINAMIDE-ADENINE-DINUCLEOTIDE | non-polymer | 663.4 | 4 | Chemie (NAD) | |||
6 | E | ZINC ION | non-polymer | 65.4 | 1 | Chemie (ZN) | |||
7 | F | S-ADENOSYL-L-HOMOCYSTEINE | non-polymer | 384.4 | 1 | Chemie (SAH) | |||
8 | T | MAGNESIUM ION | non-polymer | 24.3 | 1 | Chemie (MG) | |||
9 | water | water | 18.0 | 8 | Chemie (HOH) |
Sequence modifications
E: 51 - 583 (UniProt: O15091)
F: 40 - 403 (UniProt: Q7L0Y3)
PDB | External Database | Details |
---|---|---|
Ala 479 | Asp 479 | engineered mutation |
PDB | External Database | Details |
---|---|---|
Met 18 | - | initiating methionine |
His 19 | - | expression tag |
His 20 | - | expression tag |
His 21 | - | expression tag |
His 22 | - | expression tag |
His 23 | - | expression tag |
His 24 | - | expression tag |
Ser 25 | - | expression tag |
Ser 26 | - | expression tag |
Gly 27 | - | expression tag |
Val 28 | - | expression tag |
Asp 29 | - | expression tag |
Leu 30 | - | expression tag |
Gly 31 | - | expression tag |
Thr 32 | - | expression tag |
Glu 33 | - | expression tag |
Asn 34 | - | expression tag |
Leu 35 | - | expression tag |
Tyr 36 | - | expression tag |
Phe 37 | - | expression tag |
Gln 38 | - | expression tag |
Ser 39 | - | expression tag |
Ala 404 | - | expression tag |
Glu 405 | - | expression tag |
Asn 406 | - | expression tag |
Leu 407 | - | expression tag |
Tyr 408 | - | expression tag |
Phe 409 | - | expression tag |
Gln 410 | - | expression tag |
Ser 411 | - | expression tag |
His 412 | - | expression tag |
His 413 | - | expression tag |
His 414 | - | expression tag |
His 415 | - | expression tag |
His 416 | - | expression tag |
His 417 | - | expression tag |
Asp 418 | - | expression tag |
Tyr 419 | - | expression tag |
Lys 420 | - | expression tag |
Asp 421 | - | expression tag |
Asp 422 | - | expression tag |
Asp 423 | - | expression tag |
Asp 424 | - | expression tag |
Lys 425 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 7 |
Total formula weight | 247125.0 | |
Non-Polymers* | Number of molecules | 7 |
Total formula weight | 3127.8 | |
All* | Total formula weight | 250252.8 |