8C3V
SARS-CoV-2 Delta-RBD complexed with BA.2-13 Fab and C1 nanobody
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | H, A, C | BA.2-13 heavy chain | polymer | 231 | 24766.8 | 3 | Homo sapiens | ||
2 | L, B, D | BA.2-13 light chain | polymer | 213 | 23149.7 | 3 | Homo sapiens | ||
3 | R, X, Y | Spike protein S1 | polymer | 202 | 22935.7 | 3 | UniProt (P0DTC2) Pfam (PF09408) In PDB | Severe acute respiratory syndrome coronavirus 2 | |
4 | I, J, K | Nanobody C1 | polymer | 131 | 14659.1 | 3 | Lama glama | ||
5 | E | alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 894.8 | 1 | In PDB GlyTouCan (G42466VF) | |||
6 | F | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 732.7 | 1 | In PDB GlyTouCan (G32152BH) | |||
7 | G | alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 894.8 | 1 | In PDB GlyTouCan (G00395TQ) | |||
8 | Y, K, A, R, I... | GLYCEROL | non-polymer | 92.1 | 14 | Chemie (GOL) | |||
9 | J, R | 2-(2-METHOXYETHOXY)ETHANOL | non-polymer | 120.1 | 2 | Chemie (PG0) | |||
10 | Y, X | TETRAETHYLENE GLYCOL | non-polymer | 194.2 | 2 | Chemie (PG4) |
Sequence modifications
R, X, Y: 333 - 528 (UniProt: P0DTC2)
PDB | External Database | Details |
---|---|---|
His 327 | - | expression tag |
His 328 | - | expression tag |
His 329 | - | expression tag |
His 330 | - | expression tag |
His 331 | - | expression tag |
His 332 | - | expression tag |
Arg 452 | Leu 452 | conflict |
Lys 478 | Thr 478 | conflict |
Lys 527 | Pro 527 | conflict |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 12 |
Total formula weight | 256533.9 | |
Branched | Number of molecules | 3 |
Total formula weight | 2522.3 | |
Non-Polymers* | Number of molecules | 18 |
Total formula weight | 1918.1 | |
All* | Total formula weight | 260974.3 |