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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

8C3A

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
11, AS25Spolymer33591085278.12Candida albicans
23, AT5Spolymer12138943.12Candida albicans
34, AU5.8Spolymer15850683.92Candida albicans
4j, AW60S ribosomal protein L2-Bpolymer25427366.62UniProt (A0A8H6F1X9)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Candida albicans
5k, AX60S ribosomal protein L3polymer38944040.82UniProt (Q59LS1)
Pfam (PF00297)
In PDB		Candida albicans
6l, AY60S ribosomal protein L4-Bpolymer36339282.42UniProt (A0A8H6F4H4)
Pfam (PF00573)
Pfam (PF14374)
In PDB		Candida albicans
7m, AZUncharacterized protein CaJ7.0206polymer29834558.02UniProt (G1UAA6)
Pfam (PF17144)
Pfam (PF14204)
In PDB		Candida albicans
8n, BA60S ribosomal protein L6polymer17619798.02UniProt (Q9P834)
Pfam (PF01159)
In PDB		Candida albicans
9o, BB60S ribosomal protein L7-Apolymer24127447.02UniProt (A0A8H6BVN2)
Pfam (PF08079)
Pfam (PF00327)
In PDB		Candida albicans
10p, BC60S ribosomal protein L8polymer26228549.42UniProt (A0A8H6C337)
Pfam (PF01248)
In PDB		Candida albicans
11q, BD60S ribosomal protein L9-Bpolymer19121755.22UniProt (A0A8H6C3N3)
Pfam (PF00347)
In PDB		Candida albicans
12r, BE60S ribosomal protein L10polymer22025236.32UniProt (Q5AIB8)
Pfam (PF00252)
In PDB		Candida albicans
13s, BF60S ribosomal protein L11-Bpolymer17419859.82UniProt (A0A8H6F1S5)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Candida albicans
14t, BG60S ribosomal protein L13polymer20223105.82UniProt (A0A8H6F5V7)
Pfam (PF01294)
In PDB		Candida albicans
15u, BH60S ribosomal protein L14-Bpolymer13114748.52UniProt (A0A8H6F332)
Pfam (PF01929)
In PDB		Candida albicans
16v, BI60S ribosomal protein L15-Apolymer20424389.32UniProt (Q5A6R1)
Pfam (PF00827)
In PDB		Candida albicans
17w, BJRibosomal protein L13polymer20022685.82UniProt (A0A8H6BZ56)
Pfam (PF00572)
In PDB		Candida albicans
18x, BKRibosomal protein L22polymer18521002.92UniProt (A0A8H6BUG0)
Pfam (PF00237)
In PDB		Candida albicans
19y, BL60S ribosomal protein L18-Apolymer18620817.42UniProt (A0A8H6C4Y1)
Pfam (PF17135)
In PDB		Candida albicans
20z, BM60S ribosomal protein L19-Apolymer19021942.82UniProt (A0A1D8PK40)
Pfam (PF01280)
In PDB		Candida albicans
210, BN60S ribosomal protein L20polymer17220376.92UniProt (A0A8H6BZJ3)
Pfam (PF01775)
In PDB		Candida albicans
222, BO60S ribosomal protein L21-Apolymer16018049.92UniProt (A0A8H6F1C8)
Pfam (PF01157)
In PDB		Candida albicans
235, BP60S ribosomal protein L22-Bpolymer12414107.92UniProt (A0A1D8PM41)
Pfam (PF01776)
In PDB		Candida albicans
246, BQ60S ribosomal protein L23-Apolymer13714495.02UniProt (A0A8H6C444)
Pfam (PF00238)
In PDB		Candida albicans
257, BR60S ribosomal protein L24-Apolymer15517430.32UniProt (A0A8H6C4U1)
Pfam (PF01246)
In PDB		Candida albicans
268, BS60S ribosomal protein L25polymer14215873.62UniProt (A0A8H6F6A1)
Pfam (PF03939)
Pfam (PF00276)
In PDB		Candida albicans
279, BTRibosomal protein L24polymer12714215.52UniProt (A0A8H6F3X2)
Pfam (PF16906)
In PDB		Candida albicans
28AA, BU60S ribosomal protein L27polymer13615551.42UniProt (Q9P843)
Pfam (PF01777)
In PDB		Candida albicans
29AB, BV60S ribosomal protein L28polymer14916703.42UniProt (A0A8H6BVY8)
Pfam (PF00828)
In PDB		Candida albicans
30AC, BW60S ribosomal protein L29polymer637135.32UniProt (A0A8H6F0G8)
Pfam (PF01779)
In PDB		Candida albicans
31AD, BX60S ribosomal protein L30polymer10611520.42UniProt (A0A1D8PM75)
Pfam (PF01248)
In PDB		Candida albicans
32AE, BY60S ribosomal protein L31-Bpolymer11212993.12UniProt (A0A8H6F1M1)
Pfam (PF01198)
In PDB		Candida albicans
33AF, BZ60S ribosomal protein L32polymer13114993.72UniProt (O94008)
Pfam (PF01655)
In PDB		Candida albicans
34AG, CA60S ribosomal protein L33-Apolymer10712138.22UniProt (A0A8H6BW57)
Pfam (PF01247)
In PDB		Candida albicans
35AH, CB60S ribosomal protein L34-Bpolymer12213774.32UniProt (A0A8H6F171)
Pfam (PF01199)
In PDB		Candida albicans
36AI, CCRibosomal protein L29polymer12014118.82UniProt (A0A8H6F6B7)
Pfam (PF00831)
In PDB		Candida albicans
37AJ, CD60S ribosomal protein L36polymer9911096.22UniProt (P47834)
Pfam (PF01158)
In PDB		Candida albicansL39
38AK, CE60S ribosomal protein L37-Bpolymer879847.62UniProt (A0A1D8PF45)
Pfam (PF01907)
In PDB		Candida albicans
39AL, CF60S ribosomal protein L38polymer788911.52UniProt (A0A1D8PG16)
Pfam (PF01781)
In PDB		Candida albicans
40AM, CG60S ribosomal protein L39polymer516347.52UniProt (Q96W55)
Pfam (PF00832)
In PDB		Candida albicansL46
41AN, CH60S ribosomal protein L40-Bpolymer526078.42UniProt (A0A1D8PL68)
Pfam (PF01020)
In PDB		Candida albicans
42AO, CI60S ribosomal protein L41polymer253396.32UniProt (P9WER7)
Pfam (PF05162)
In PDB		Candida albicans
43AP, CJ60S ribosomal protein L42-Bpolymer10612259.62UniProt (A0A8H6BR69)
Pfam (PF00935)
In PDB		Candida albicans
44AQ, CK60S ribosomal protein L43-Apolymer9210136.82UniProt (A0A1D8PP14)
Pfam (PF01780)
In PDB		Candida albicans
45i, CL60S ribosomal protein CAALFM_C304810CApolymer26729126.12UniProt (A0A1D8PK71)
Pfam (PF09598)
In PDB		Candida albicans
46B, CM18Spolymer1787575838.62Candida albicans
47C, CN40S ribosomal protein S0polymer26128759.32UniProt (A0A8H6C395)
Pfam (PF00318)
In PDB		Candida albicans
48D, CO40S ribosomal protein S1polymer25629041.92UniProt (A0A8H6C387)
Pfam (PF01015)
In PDB		Candida albicans
49E, CPRibosomal protein S5polymer24926917.32UniProt (A0A8H6BZ90)
Pfam (PF00333)
Pfam (PF03719)
In PDB		Candida albicans
50F, CQRibosomal protein S3polymer25127313.62UniProt (A0A8H6BYS1)
Pfam (PF07650)
Pfam (PF00189)
In PDB		Candida albicans
51G, CR40S ribosomal protein S4polymer26229435.42UniProt (A0A1D8PCI6)
Pfam (PF08071)
Pfam (PF01479)
Pfam (PF00900)
Pfam (PF00467)
Pfam (PF16121)
In PDB		Candida albicans
52H, CSRibosomal protein S7polymer22525319.92UniProt (A0A8H6BS29)
Pfam (PF00177)
In PDB		Candida albicans
53I, CT40S ribosomal protein S6polymer23627146.52UniProt (A0A8H6BZ37)
Pfam (PF01092)
In PDB		Candida albicans
54J, CU40S ribosomal protein S7polymer18621285.82UniProt (A0A8H6C655)
Pfam (PF01251)
In PDB		Candida albicans
55K, CV40S ribosomal protein S8polymer20622802.02UniProt (A0A8H6F0S0)
Pfam (PF01201)
In PDB		Candida albicans
56L, CWRibosomal protein S4polymer18921765.12UniProt (A0A8H6F1X2)
Pfam (PF00163)
Pfam (PF01479)
In PDB		Candida albicans
57M, CX40S ribosomal protein S10-Apolymer11813836.82UniProt (A0A8H6BWQ8)
Pfam (PF03501)
In PDB		Candida albicans
58N, CY40S ribosomal protein S11Apolymer15517638.62UniProt (A0A1D8PN83)
Pfam (PF16205)
Pfam (PF00366)
In PDB		Candida albicans
59O, CZ40S ribosomal protein S12polymer14315715.92UniProt (A0A8H6C3A1)
Pfam (PF01248)
In PDB		Candida albicans
60P, DA40S ribosomal protein S13polymer15116976.82UniProt (A0A8H6F4G0)
Pfam (PF08069)
Pfam (PF00312)
In PDB		Candida albicans
61Q, DB40S ribosomal protein S14-Apolymer13214052.12UniProt (A0A8H6F0V4)
Pfam (PF00411)
In PDB		Candida albicans
62R, DC40S ribosomal protein S15polymer14215967.82UniProt (A0A1D8PK22)
Pfam (PF00203)
In PDB		Candida albicans
63S, DD40S ribosomal protein S16polymer14215769.52UniProt (O94017)
Pfam (PF00380)
In PDB		Candida albicans
64T, DE40S ribosomal protein S17-Bpolymer13715770.32UniProt (A0A8H6BTR7)
Pfam (PF00833)
In PDB		Candida albicans
65U, DF40S ribosomal protein S18-Bpolymer14517023.82UniProt (A0A8H6F3Y8)
Pfam (PF00416)
In PDB		Candida albicans
66V, DG40S ribosomal protein S19-Apolymer14516097.22UniProt (A0A8H6C5L4)
Pfam (PF01090)
In PDB		Candida albicans
67W, DHRibosomal protein S10polymer11913366.52UniProt (A0A8H6BYJ9)
Pfam (PF00338)
In PDB		Candida albicans
68X, DI40S ribosomal protein S21polymer879652.82UniProt (Q9P844)
Pfam (PF01249)
In PDB		Candida albicans
69Y, DJ40S ribosomal protein S22-Apolymer13014807.22UniProt (A0A8H6F0N4)
Pfam (PF00410)
In PDB		Candida albicans
70Z, DKRibosomal protein S23 (S12)polymer14516000.82UniProt (A0A8H6F0V0)
Pfam (PF00164)
In PDB		Candida albicans
71a, DL40S ribosomal protein S24polymer13515546.92UniProt (A0A8H6C3K1)
Pfam (PF01282)
In PDB		Candida albicans
72b, DM40S ribosomal protein S25polymer10511633.82UniProt (A0A8H6EZQ8)
Pfam (PF03297)
In PDB		Candida albicans
73c, DN40S ribosomal protein S26polymer11913606.12UniProt (A0A8H6BTS1)
Pfam (PF01283)
In PDB		Candida albicans
74d, DO40S ribosomal protein S27polymer828982.52UniProt (A0A8H6BWE6)
Pfam (PF01667)
In PDB		Candida albicans
75e, DP40S ribosomal protein S28-Bpolymer677536.82UniProt (A0A8H6C0A5)
Pfam (PF01200)
In PDB		Candida albicans
76f, DQ40S ribosomal protein S29Apolymer566615.62UniProt (A0A1D8PTR4)
Pfam (PF00253)
In PDB		Candida albicans
77g, DR40S ribosomal protein S30polymer637127.42UniProt (A0A1D8PSK2)
Pfam (PF04758)
In PDB		Candida albicans
78h, DSUbiquitin-40S ribosomal protein S31 fusion proteinpolymer19322615.52UniProt (Q5A109)
Pfam (PF00240)
In PDB		Candida albicans
79AR, DTGuanine nucleotide-binding protein subunit beta-like proteinpolymer31734593.92UniProt (A0A8H6C3E7)
Pfam (PF00400)
In PDB		Candida albicans
80P0, p060S acidic ribosomal protein P0polymer31233302.62UniProt (G1UA71)
Pfam (PF00466)
Pfam (PF17777)
Pfam (PF00428)
In PDB		Candida albicans
811260S ribosomal protein L12-Apolymer16517791.51UniProt (A0A8H6C5X8)
Pfam (PF03946)
Pfam (PF00298)
In PDB		Candida albicans
82L1, l1Ribosomal proteinpolymer21724416.72UniProt (A0A8H6F4E7)
Pfam (PF00687)
In PDB		Candida albicans
831, AS, 3, AW, k...MAGNESIUM IONnon-polymer24.31430Chemie (MG)
841, AS3-O-acetyl-2-O-(3-O-acetyl-6-deoxy-beta-D-glucopyranosyl)-6-deoxy-1-O-{[(2R,2'S,3a'R,4''S,5''R,6'S,7a'S)-5''-methyl-4''-{[(2E)-3-phenylprop-2-enoyl]oxy}decahydrodispiro[oxirane-2,3'-[1]benzofuran-2',2''-pyran]-6'-yl]carbonyl}-beta-D-glucopyranosenon-polymer804.82Chemie (3K5)
85AS, 1ailanthonenon-polymer378.42Chemie (TIX)
86AQ, DQ, DS, CB, c...ZINC IONnon-polymer65.418Chemie (ZN)
87waterwater18.066Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains163
Total formula weight6370688.0
Non-Polymers*Number of molecules1452
Total formula weight38300.0
All*Total formula weight6408988.0
*Water molecules are not included.

220472

PDB entries from 2024-05-29

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