8BYH
Crystal structure of TrmD domain from Calditerrivibrio nitroreducens in complex with S-adenosyl-L-methionine
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B (A, B) | tRNA (guanine-N(1)-)-methyltransferase | polymer | 243 | 27878.8 | 2 | UniProt (E4THH1) Pfam (PF01746) | Calditerrivibrio nitroreducens DSM 19672 | |
| 2 | C, E, K, L, M (A, B) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 5 | Chemie (EDO) | |||
| 3 | D (A) | GLYCEROL | non-polymer | 92.1 | 1 | Chemie (GOL) | |||
| 4 | F, H, I (A, B) | CHLORIDE ION | non-polymer | 35.5 | 3 | Chemie (CL) | |||
| 5 | G, J (A, B) | S-ADENOSYLMETHIONINE | non-polymer | 398.4 | 2 | Chemie (SAM) | |||
| 6 | N, O (A, B) | water | water | 18.0 | 396 | Chemie (HOH) |
Sequence modifications
A, B: 1 - 240 (UniProt: E4THH1)
| PDB | External Database | Details |
|---|---|---|
| Gly -2 | - | expression tag |
| Pro -1 | - | expression tag |
| His 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 55757.6 | |
| Non-Polymers* | Number of molecules | 11 |
| Total formula weight | 1305.7 | |
| All* | Total formula weight | 57063.3 |
