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8BTK

Structure of the TRAP complex with the Sec translocon and a translating ribosome

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1B528S rRNApolymer48081557519.51GenBank (GBCN01009604.1)Oryctolagus cuniculus (rabbit)
2B75S rRNApolymer12038691.91GenBank (4CXE_4)Oryctolagus cuniculus (rabbit)
3B85.8S rRNApolymer15850809.01GenBank (GBCN01009604.1)Oryctolagus cuniculus (rabbit)
4BA60S ribosomal protein L8polymer25728103.91UniProt (A0A5F9C4D3)
UniProt (A0A5F9D5B2)
Pfam (PF00181)
Pfam (PF03947)
In PDB
Oryctolagus cuniculus (rabbit)
5BBRibosomal protein L3polymer40346121.01UniProt (G1TL06)
Pfam (PF00297)
In PDB
Oryctolagus cuniculus (rabbit)
6BC60S ribosomal protein L4polymer41346430.91UniProt (G1SVW5)
Pfam (PF00573)
Pfam (PF14374)
In PDB
Oryctolagus cuniculus (rabbit)
7BDRibosomal_L18_c domain-containing proteinpolymer29734481.81UniProt (G1SYJ6)
UniProt (by SIFTS) (P19949)
In PDB
Oryctolagus cuniculus (rabbit)
8BE60S ribosomal protein L6polymer29133028.31UniProt (G1SKF7)
Pfam (PF03868)
Pfam (PF01159)
In PDB
Oryctolagus cuniculus (rabbit)
9BFuL30,60S ribosomal protein L7polymer24729201.81UniProt (G1SV32)
Pfam (PF08079)
Pfam (PF00327)
In PDB
Oryctolagus cuniculus (rabbit)
10BG60S ribosomal protein L7apolymer26630061.81UniProt (G1STW0)
Pfam (PF01248)
In PDB
Oryctolagus cuniculus (rabbit)
11BH60S ribosomal protein L9polymer19221871.41UniProt (G1SWI6)
Pfam (PF00347)
In PDB
Oryctolagus cuniculus (rabbit)
12BIRibosomal protein L10polymer21424643.11UniProt (B7NZQ2)
Pfam (PF00252)
In PDB
Oryctolagus cuniculus (rabbit)
13BJRibosomal protein L11polymer17820288.51UniProt (G1TUB8)
Pfam (PF00281)
Pfam (PF00673)
In PDB
Oryctolagus cuniculus (rabbit)
14BKNascent chainpolymer292486.11Saccharomyces cerevisiae
15BLL13polymer21124331.71UniProt (G1TKB3)
Pfam (PF01294)
In PDB
Oryctolagus cuniculus (rabbit)
16BMRibosomal protein L14polymer21823870.51UniProt (G1SZ12)
Pfam (PF01929)
In PDB
Oryctolagus cuniculus (rabbit)
17BNRibosomal protein L15polymer20424207.31UniProt (G1T0C1)
Pfam (PF00827)
In PDB
Oryctolagus cuniculus (rabbit)
18BO60S ribosomal protein L13apolymer20323533.31UniProt (A0A0N8ETI8)
Pfam (PF00572)
In PDB
Oryctolagus cuniculus (rabbit)
19BPuL22polymer18421444.21UniProt (G1TVT6)
Pfam (PF00237)
UniProt (by SIFTS) (G1SCJ6)
In PDB
Oryctolagus cuniculus (rabbit)
20BQeL18polymer18821699.71UniProt (F6QKI9)
Pfam (PF17135)
In PDB
Oryctolagus cuniculus (rabbit)
21BR60S ribosomal protein L19polymer19623535.31UniProt (Q3T0W9)
Pfam (PF01280)
In PDB
Oryctolagus cuniculus (rabbit)eL19
22BS60S ribosomal protein L18apolymer17620749.41UniProt (G1TTY7)
Pfam (PF01775)
In PDB
Oryctolagus cuniculus (rabbit)
23BT60S ribosomal protein L21polymer16018610.01UniProt (G1SHQ2)
Pfam (PF01157)
In PDB
Oryctolagus cuniculus (rabbit)eL21
24BU60S ribosomal protein L22polymer12814756.91UniProt (G1TSG1)
Pfam (PF01776)
In PDB
Oryctolagus cuniculus (rabbit)
25BVRibosomal protein L23polymer14014892.51UniProt (G1T6D1)
Pfam (PF00238)
In PDB
Oryctolagus cuniculus (rabbit)
26BWRibosomal protein L24polymer15717825.11UniProt (G1SE28)
Pfam (PF01246)
In PDB
Oryctolagus cuniculus (rabbit)
27BXRibosomal_L23eN domain-containing proteinpolymer15617768.21UniProt (G1SE76)
Pfam (PF03939)
Pfam (PF00276)
In PDB
Oryctolagus cuniculus (rabbit)uL23
28BYRibosomal protein L26polymer14517303.41UniProt (G1SQH0)
Pfam (PF16906)
Pfam (PF00467)
In PDB
Oryctolagus cuniculus (rabbit)
29BZ60S ribosomal protein L27polymer13615835.81UniProt (G1TXF6)
Pfam (PF00467)
Pfam (PF01777)
In PDB
Oryctolagus cuniculus (rabbit)
30Ba60S ribosomal protein L27apolymer14816635.61UniProt (G1SNY0)
Pfam (PF00828)
In PDB
Oryctolagus cuniculus (rabbit)
31Bb60S ribosomal protein L29polymer24526721.71UniProt (G1SGR6)
Pfam (PF01779)
In PDB
Oryctolagus cuniculus (rabbit)
32BceL30polymer11512807.11UniProt (G1TDL2)
Pfam (PF01248)
In PDB
Oryctolagus cuniculus (rabbit)
33BdRibosomal protein L31polymer12514494.91UniProt (G1SHG0)
Pfam (PF01198)
In PDB
Oryctolagus cuniculus (rabbit)eL31
34BeeL32polymer13515898.91UniProt (G1U437)
Pfam (PF01655)
UniProt (by SIFTS) (G1TUN8)
In PDB
Oryctolagus cuniculus (rabbit)
35Bf60S ribosomal protein L35apolymer11012580.81UniProt (G1SF08)
Pfam (PF01247)
In PDB
Oryctolagus cuniculus (rabbit)eL33
36Bg60S ribosomal protein L34polymer11713326.11UniProt (G1TXG5)
Pfam (PF01199)
In PDB
Oryctolagus cuniculus (rabbit)
37Bh60S ribosomal protein L35polymer12314566.61UniProt (G1SIT5)
Pfam (PF00831)
In PDB
Oryctolagus cuniculus (rabbit)uL29
38Bi60S ribosomal protein L36polymer10512263.81UniProt (G1TTQ5)
Pfam (PF01158)
In PDB
Oryctolagus cuniculus (rabbit)
39BjRibosomal protein L37polymer9711111.01UniProt (U3KPD5)
Pfam (PF01907)
In PDB
Oryctolagus cuniculus (rabbit)
40BkeL38polymer708238.91UniProt (G1U001)
Pfam (PF01781)
In PDB
Oryctolagus cuniculus (rabbit)
41BleL39polymer516455.81UniProt (G1TTN1)
Pfam (PF00832)
In PDB
Oryctolagus cuniculus (rabbit)
42BmUbiquitinpolymer12814800.51UniProt (P62975)
Pfam (PF00240)
In PDB
Oryctolagus cuniculus (rabbit)
43BoeL42polymer10612490.01UniProt (G1U344)
Pfam (PF00935)
UniProt (by SIFTS) (G1T040)
In PDB
Oryctolagus cuniculus (rabbit)
44BpeL43polymer9210299.41UniProt (G1SY53)
Pfam (PF01780)
In PDB
Oryctolagus cuniculus (rabbit)
45Br60S ribosomal protein L28polymer13715844.71UniProt (G1U7L1)
Pfam (PF01778)
In PDB
Oryctolagus cuniculus (rabbit)
46Bs60S acidic ribosomal protein P0polymer31834380.51UniProt (G1SPK4)
Pfam (PF17777)
Pfam (PF00428)
Pfam (PF00466)
In PDB
Oryctolagus cuniculus (rabbit)
47BtRibosomal protein L12polymer16517847.61UniProt (G1SMR7)
Pfam (PF03946)
Pfam (PF00298)
In PDB
Oryctolagus cuniculus (rabbit)
48BvRibosomal protein uL1polymer21724875.41UniProt (G1SKZ8)
Pfam (PF00687)
In PDB
Oryctolagus cuniculus (rabbit)
49SXProtein transport protein Sec61 subunit alpha isoform 1polymer47652279.41UniProt (P38377)
Pfam (PF10559)
Pfam (PF00344)
In PDB
Canis lupus familiaris (dog)Sec61 alpha-1
50SYProtein transport protein Sec61 subunit gammapolymer687752.31UniProt (P60058)
Pfam (PF00584)
In PDB
Canis lupus familiaris (dog)
51SZProtein transport protein Sec61 subunit betapolymer969987.51UniProt (P60467)
Pfam (PF03911)
In PDB
Canis lupus familiaris (dog)
52A218S rRNApolymer1870603928.31GenBank (GBCT01000564.1)Oryctolagus cuniculus (rabbit)
53AA40S ribosomal protein S27polymer849480.21UniProt (G1TZ76)
Pfam (PF01667)
In PDB
Oryctolagus cuniculus (rabbit)
54ABRibosomal protein S28polymer697855.11UniProt (G1TIB4)
Pfam (PF01200)
In PDB
Oryctolagus cuniculus (rabbit)
55ACRibosomal protein S27apolymer15618004.01UniProt (G1SK22)
Pfam (PF00240)
Pfam (PF01599)
In PDB
Oryctolagus cuniculus (rabbit)
56AD40S ribosomal protein S30polymer13314498.91UniProt (G1T8A2)
Pfam (PF00240)
Pfam (PF04758)
In PDB
Oryctolagus cuniculus (rabbit)
57AEeS26polymer11513047.51UniProt (A0A2K5LQY6)
Pfam (PF01283)
In PDB
Oryctolagus cuniculus (rabbit)
58AFRACK1polymer31735115.71UniProt (G1SJB4)
Pfam (PF00400)
In PDB
Oryctolagus cuniculus (rabbit)
59AGuS14polymer566690.81UniProt (G1U7M4)
Pfam (PF00253)
In PDB
Oryctolagus cuniculus (rabbit)
60AHmRNApolymer41200.81Oryctolagus cuniculus
61ATP-site tRNApolymer7524106.31Oryctolagus cuniculus
62AZ40S ribosomal protein SApolymer29532970.01UniProt (G1TLT8)
Pfam (PF00318)
Pfam (PF16122)
In PDB
Oryctolagus cuniculus (rabbit)37 kDa laminin receptor precursor,37LRP,37/67 kDa laminin receptor,LRP/LR,67 kDa laminin receptor,67LR,Laminin receptor 1,LamR,Laminin-binding protein precursor p40,LBP/p40
63Aa40S ribosomal protein S3apolymer26430002.11UniProt (G1SS70)
Pfam (PF01015)
In PDB
Oryctolagus cuniculus (rabbit)
64AbRibosomal_S5_C domain-containing protein,40S ribosomal protein S2polymer29331285.41UniProt (A0A5F9D8I1)
UniProt (G1TUT9)
Pfam (PF00333)
Pfam (PF03719)
In PDB
Oryctolagus cuniculus (rabbit)
65Ac40S ribosomal protein S3polymer28131146.61UniProt (G1TNM3)
Pfam (PF07650)
Pfam (PF00189)
In PDB
Oryctolagus cuniculus (rabbit)uS3
66Ad40S ribosomal protein S4polymer26329654.91UniProt (G1TK17)
Pfam (PF08071)
Pfam (PF00900)
Pfam (PF00467)
Pfam (PF16121)
In PDB
Oryctolagus cuniculus (rabbit)
67AeRibosomal protein S5polymer20422913.51UniProt (G1TFM5)
Pfam (PF00177)
In PDB
Oryctolagus cuniculus (rabbit)
68Af40S ribosomal protein S6polymer24928751.91UniProt (G1TM55)
Pfam (PF01092)
In PDB
Oryctolagus cuniculus (rabbit)
69Ag40S ribosomal protein S7polymer43247356.21UniProt (G1SVB0)
In PDB
Oryctolagus cuniculus (rabbit)
70Ah40S ribosomal protein S8polymer20824263.41UniProt (G1TJW1)
Pfam (PF01201)
In PDB
Oryctolagus cuniculus (rabbit)
71AiRibosomal protein S9 (Predicted)polymer19422641.61UniProt (B7NZS8)
Pfam (PF00163)
Pfam (PF01479)
In PDB
Oryctolagus cuniculus (rabbit)
72AjRibosomal protein eS10polymer16518933.81UniProt (G1TPV3)
Pfam (PF03501)
In PDB
Oryctolagus cuniculus (rabbit)
73Ak40S ribosomal protein S11polymer15818468.81UniProt (G1TRM4)
Pfam (PF16205)
Pfam (PF00366)
In PDB
Oryctolagus cuniculus (rabbit)
74Al40S ribosomal protein S12polymer13214539.01UniProt (G1SFR8)
Pfam (PF01248)
In PDB
Oryctolagus cuniculus (rabbit)
75AmuS15polymer15117259.41UniProt (G1SP51)
Pfam (PF08069)
Pfam (PF00312)
In PDB
Oryctolagus cuniculus (rabbit)
76An40S ribosomal protein S14polymer15116316.81UniProt (G1U472)
Pfam (PF00411)
UniProt (by SIFTS) (G1T1F0)
In PDB
Oryctolagus cuniculus (rabbit)
77Ao40S ribosomal protein uS19polymer14517049.21UniProt (G1U0Q2)
Pfam (PF00203)
In PDB
Oryctolagus cuniculus (rabbit)
78ApuS9polymer17219213.51UniProt (G1SGX4)
Pfam (PF00380)
In PDB
Oryctolagus cuniculus (rabbit)
79Aq40S ribosomal protein eS17polymer13515552.11UniProt (G1TU13)
Pfam (PF00833)
In PDB
Oryctolagus cuniculus (rabbit)
80Ar40S ribosomal protein S18polymer15217801.81UniProt (G1TPG3)
Pfam (PF00416)
In PDB
Oryctolagus cuniculus (rabbit)
81As40S ribosomal protein S19polymer14516104.61UniProt (G1TN62)
Pfam (PF01090)
In PDB
Oryctolagus cuniculus (rabbit)
82At40S ribosomal protein uS10polymer11913398.81UniProt (G1SIZ2)
Pfam (PF00338)
In PDB
Oryctolagus cuniculus (rabbit)
83Au40S ribosomal protein S21polymer839181.41UniProt (G1TM82)
Pfam (PF01249)
In PDB
Oryctolagus cuniculus (rabbit)
84AvRibosomal protein S15apolymer13014865.61UniProt (G1TG89)
Pfam (PF00410)
In PDB
Oryctolagus cuniculus (rabbit)
85Aw40S ribosomal protein S23polymer14315860.71UniProt (G1SZ47)
Pfam (PF00164)
In PDB
Oryctolagus cuniculus (rabbit)
86Ax40S ribosomal protein S24polymer13015107.91UniProt (G1T3D8)
Pfam (PF01282)
In PDB
Oryctolagus cuniculus (rabbit)
87Ay40S ribosomal protein S25polymer12413645.01UniProt (G1TDB3)
Pfam (PF03297)
In PDB
Oryctolagus cuniculus (rabbit)
88Az60S ribosomal protein L41polymer253473.51UniProt (A0A087WNH4)
Pfam (PF05162)
In PDB
Oryctolagus cuniculus (rabbit)
89TATranslocon-associated protein subunit alphapolymer28632002.81UniProt (P16967)
Pfam (PF03896)
In PDB
Canis lupus familiaris (dog)TRAP-alpha,PGP35,Signal sequence receptor subunit alpha,SSR-alpha
90TBTranslocon-associated protein subunit betapolymer18320121.01UniProt (P23438)
Pfam (PF05753)
In PDB
Canis lupus familiaris (dog)TRAP-beta,Glycoprotein 25H,gp25H,Signal sequence receptor subunit beta,SSR-beta
91TCSignal sequence receptor subunit 3polymer18521090.51UniProt (A0A8P0SDY6)
Pfam (PF07074)
UniProt (by SIFTS) (A0A8C0T6I4)
In PDB
Canis lupus familiaris (dog)
92TDTranslocon-associated protein subunit deltapolymer17318959.51UniProt (A0A8C0NNM2)
Pfam (PF05404)
In PDB
Canis lupus familiaris (dog)Signal sequence receptor subunit delta
93B5, A2, BNSPERMIDINEnon-polymer145.230Chemie (SPD)
94B5, A2SPERMINEnon-polymer202.33Chemie (SPM)
95A2, B5, As, B8, BT...MAGNESIUM IONnon-polymer24.3750Chemie (MG)
96B7GUANOSINE-5'-TRIPHOSPHATEnon-polymer523.21Chemie (GTP)
97BDACETYLAMINO-ACETIC ACIDnon-polymer117.11Chemie (AAC)
98Bg, Bj, AC, AE, AG...ZINC IONnon-polymer65.48Chemie (ZN)
Sequence modifications
B5: 1 - 4808 (GenBank: GBCN01009604.1)
PDBExternal DatabaseDetails
Uy1 3550U 5943conflict
BA: 1 - 205 (UniProt: A0A5F9C4D3)
BA: 206 - 257 (UniProt: A0A5F9D5B2)
BF: 1 - 5 (PDB: 8BTK)
BF: 6 - 247 (UniProt: G1SV32)
BG: 1 - 24 (PDB: 8BTK)
BG: 25 - 266 (UniProt: G1STW0)
PDBExternal DatabaseDetails
Ala 86Val 139conflict
Gly 191Cys 244conflict
BL: 1 - 211 (UniProt: G1TKB3)
PDBExternal DatabaseDetails
Arg 74His 74conflict
Arg 190His 190conflict
BO: 1 - 203 (UniProt: A0A0N8ETI8)
PDBExternal DatabaseDetails
Leu 174Ile 174conflict
Asp 194Glu 194conflict
BQ: 1 - 188 (UniProt: F6QKI9)
PDBExternal DatabaseDetails
Arg 134Cys 134conflict
BS: 1 - 175 (UniProt: G1TTY7)
PDBExternal DatabaseDetails
Met 1Thr 1conflict
Pro 18-insertion
Thr 19-insertion
Pro 20Ser 18conflict
Ser 49Leu 47conflict
Gln 50Glu 48conflict
Arg 95His 93conflict
Thr 101Ile 99conflict
Thr 102Met 100conflict
Gly 104Ser 102conflict
Arg 138Pro 136conflict
Ser 168Tyr 166conflict
BS: 176 - 176 (PDB: 8BTK)
BU: 1 - 128 (UniProt: G1TSG1)
PDBExternal DatabaseDetails
Gly 32Arg 32conflict
Ala 36Glu 36conflict
Phe 39Ser 39conflict
Gly 54Arg 54conflict
Arg 97His 97conflict
Bk: 1 - 70 (UniProt: G1U001)
PDBExternal DatabaseDetails
Lys 24Asn 24conflict
Bm: 1 - 76 (UniProt: P62975)
Bm: 77 - 128 (PDB: 8BTK)
Br: 1 - 137 (UniProt: G1U7L1)
PDBExternal DatabaseDetails
Arg 103His 103conflict
A2: 1 - 1870 (GenBank: GBCT01000564.1)
PDBExternal DatabaseDetails
B8n 1249C 3623conflict
4ac 1338C 3712conflict
4ac 1843C 4217conflict
Ab: 1 - 42 (UniProt: A0A5F9D8I1)
PDBExternal DatabaseDetails
Ala 2Val 2conflict
Arg 36Cys 36conflict
Arg 38Gly 38conflict
Gly 39Lys 39conflict
Arg 40Ala 40conflict
Arg 42Asp 42conflict
Ab: 43 - 293 (UniProt: G1TUT9)
PDBExternal DatabaseDetails
Met 73Val 50conflict
Gly 119Ala 96conflict
Arg 194His 171conflict
Met 215Leu 192conflict
Arg 227Trp 204conflict
Gly 228Ser 205conflict
Ad: 1 - 263 (UniProt: G1TK17)
PDBExternal DatabaseDetails
Gly 25Ser 25conflict
Arg 51Lys 51conflict
Thr 78Ala 78conflict
Val 156Met 156conflict
Ah: 1 - 208 (UniProt: G1TJW1)
PDBExternal DatabaseDetails
Arg 47Gly 47conflict
An: 1 - 151 (UniProt: G1U472)
PDBExternal DatabaseDetails
5f0 138Asp 155conflict
As: 1 - 145 (UniProt: G1TN62)
PDBExternal DatabaseDetails
Gly 119Trp 119conflict
Asn 142Lys 142conflict
Au: 1 - 57 (UniProt: G1TM82)
PDBExternal DatabaseDetails
Asn 3Ser 26conflict
Asp 4Asn 27conflict
Gln 33Pro 56conflict
Phe 50Ser 73conflict
Au: 58 - 83 (PDB: 8BTK)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains92
Total formula weight4013619.3
Non-Polymers*Number of molecules793
Total formula weight24356.7
All*Total formula weight4037976.0
*Water molecules are not included.

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PDB entries from 2024-07-24

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