8BSE
CRYSTAL STRUCTURE OF SARS-COV-2 RECEPTOR BINDING DOMAIN (RBD) in complex with 1D1 Fab
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | Spike glycoprotein | polymer | 231 | 26095.3 | 1 | UniProt (P0DTC2) Pfam (PF09408) | Severe acute respiratory syndrome coronavirus 2 | S glycoprotein,E2,Peplomer protein |
| 2 | B (H) | 1D1 FAB HEAVY CHAIN | polymer | 221 | 23324.3 | 1 | Homo sapiens (Human) | ||
| 3 | C (L) | 1D1 FAB LIGHT CHAIN | polymer | 214 | 23446.0 | 1 | Homo sapiens (Human) | ||
| 4 | D (A) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 1 | Chemie (NAG) | |||
| 5 | E, F, G, H, J (A, H, L) | GLYCEROL | non-polymer | 92.1 | 5 | Chemie (GOL) | |||
| 6 | I (H) | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL | non-polymer | 122.1 | 1 | Chemie (TRS) | |||
| 7 | K, L, M (A, H, L) | water | water | 18.0 | 499 | Chemie (HOH) |
Sequence modifications
A: 319 - 541 (UniProt: P0DTC2)
| PDB | External Database | Details |
|---|---|---|
| Ser 542 | - | expression tag |
| Gly 543 | - | expression tag |
| His 544 | - | expression tag |
| His 545 | - | expression tag |
| His 546 | - | expression tag |
| His 547 | - | expression tag |
| His 548 | - | expression tag |
| His 549 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 72865.6 | |
| Non-Polymers* | Number of molecules | 7 |
| Total formula weight | 803.8 | |
| All* | Total formula weight | 73669.4 |
