8BQL
W-formate dehydrogenase from Desulfovibrio vulgaris - Co-crystallized with Formate and Reoxidized by exposure to air for 12 min
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | Formate dehydrogenase, alpha subunit, selenocysteine-containing | polymer | 1013 | 112437.0 | 1 | UniProt (Q72EJ1) Pfam (PF04879) Pfam (PF00384) Pfam (PF01568) | Desulfovibrio vulgaris str. Hildenborough | |
| 2 | B (B) | Formate dehydrogenase, beta subunit, putative | polymer | 236 | 26481.5 | 1 | UniProt (Q72EJ0) Pfam (PF13247) | Desulfovibrio vulgaris str. Hildenborough | |
| 3 | C, D (A) | 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE | non-polymer | 740.6 | 2 | Chemie (MGD) | |||
| 4 | E, M, N, O (A, B) | IRON/SULFUR CLUSTER | non-polymer | 351.6 | 4 | Chemie (SF4) | |||
| 5 | F (A) | TUNGSTEN ION | non-polymer | 183.8 | 1 | Chemie (W) | |||
| 6 | G (A) | HYDROSULFURIC ACID | non-polymer | 34.1 | 1 | Chemie (H2S) | |||
| 7 | H, I, J, K, L (A) | GLYCEROL | non-polymer | 92.1 | 5 | Chemie (GOL) | |||
| 8 | P (B) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 1 | Chemie (EDO) | |||
| 9 | Q, R (A, B) | water | water | 18.0 | 373 | Chemie (HOH) |
Sequence modifications
A: 36 - 1005 (UniProt: Q72EJ1)
B: 2 - 215 (UniProt: Q72EJ0)
| PDB | External Database | Details |
|---|---|---|
| Met 1 | - | initiating methionine |
| Thr 2 | - | expression tag |
| Val 3 | - | expression tag |
| Thr 4 | - | expression tag |
| Arg 5 | - | expression tag |
| Arg 6 | - | expression tag |
| His 7 | - | expression tag |
| Phe 8 | - | expression tag |
| Leu 9 | - | expression tag |
| Lys 10 | - | expression tag |
| Leu 11 | - | expression tag |
| Ser 12 | - | expression tag |
| Ala 13 | - | expression tag |
| Gly 14 | - | expression tag |
| Ala 15 | - | expression tag |
| Ala 16 | - | expression tag |
| Val 17 | - | expression tag |
| Ala 18 | - | expression tag |
| Gly 19 | - | expression tag |
| Ala 20 | - | expression tag |
| Phe 21 | - | expression tag |
| Thr 22 | - | expression tag |
| Gly 23 | - | expression tag |
| Leu 24 | - | expression tag |
| Gly 25 | - | expression tag |
| Leu 26 | - | expression tag |
| Ser 27 | - | expression tag |
| Leu 28 | - | expression tag |
| Ala 29 | - | expression tag |
| Pro 30 | - | expression tag |
| Thr 31 | - | expression tag |
| Val 32 | - | expression tag |
| Ala 33 | - | expression tag |
| Arg 34 | - | expression tag |
| Ala 35 | - | expression tag |
| Trp 1006 | - | expression tag |
| Ser 1007 | - | expression tag |
| His 1008 | - | expression tag |
| Pro 1009 | - | expression tag |
| Gln 1010 | - | expression tag |
| Phe 1011 | - | expression tag |
| Glu 1012 | - | expression tag |
| Lys 1013 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Met 1 | - | initiating methionine |
| Asp 216 | - | expression tag |
| Leu 217 | - | expression tag |
| Ala 218 | - | expression tag |
| Pro 219 | - | expression tag |
| Ser 220 | - | expression tag |
| Met 221 | - | expression tag |
| Met 222 | - | expression tag |
| Thr 223 | - | expression tag |
| Arg 224 | - | expression tag |
| Gln 225 | - | expression tag |
| Gln 226 | - | expression tag |
| Leu 227 | - | expression tag |
| Phe 228 | - | expression tag |
| Ala 229 | - | expression tag |
| Arg 230 | - | expression tag |
| Leu 231 | - | expression tag |
| Phe 232 | - | expression tag |
| Arg 233 | - | expression tag |
| Pro 234 | - | expression tag |
| Arg 235 | - | expression tag |
| Ala 236 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 138918.5 | |
| Non-Polymers* | Number of molecules | 14 |
| Total formula weight | 3628.1 | |
| All* | Total formula weight | 142546.6 |
