8BQG
W-formate dehydrogenase from Desulfovibrio vulgaris - Soaking with Formate 1 min
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A (A) | Formate dehydrogenase, alpha subunit, selenocysteine-containing | polymer | 1013 | 112437.0 | 1 | UniProt (Q72EJ1) Pfam (PF04879) Pfam (PF00384) Pfam (PF01568) | Desulfovibrio vulgaris str. Hildenborough | |
2 | B (B) | Formate dehydrogenase, beta subunit, putative | polymer | 236 | 26481.5 | 1 | UniProt (Q72EJ0) Pfam (PF13247) | Desulfovibrio vulgaris str. Hildenborough | |
3 | C, D (A) | 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE | non-polymer | 740.6 | 2 | Chemie (MGD) | |||
4 | E, N, O, P (A, B) | IRON/SULFUR CLUSTER | non-polymer | 351.6 | 4 | Chemie (SF4) | |||
5 | F (A) | HYDROSULFURIC ACID | non-polymer | 34.1 | 1 | Chemie (H2S) | |||
6 | G (A) | TUNGSTEN ION | non-polymer | 183.8 | 1 | Chemie (W) | |||
7 | H, I, K (A) | GLYCEROL | non-polymer | 92.1 | 3 | Chemie (GOL) | |||
8 | J (A) | DI(HYDROXYETHYL)ETHER | non-polymer | 106.1 | 1 | Chemie (PEG) | |||
9 | L, Q (A, B) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 2 | Chemie (EDO) | |||
10 | M (A) | FORMIC ACID | non-polymer | 46.0 | 1 | Chemie (FMT) | |||
11 | R, S (A, B) | water | water | 18.0 | 148 | Chemie (HOH) |
Sequence modifications
A: 36 - 1005 (UniProt: Q72EJ1)
B: 2 - 215 (UniProt: Q72EJ0)
PDB | External Database | Details |
---|---|---|
Met 1 | - | initiating methionine |
Thr 2 | - | expression tag |
Val 3 | - | expression tag |
Thr 4 | - | expression tag |
Arg 5 | - | expression tag |
Arg 6 | - | expression tag |
His 7 | - | expression tag |
Phe 8 | - | expression tag |
Leu 9 | - | expression tag |
Lys 10 | - | expression tag |
Leu 11 | - | expression tag |
Ser 12 | - | expression tag |
Ala 13 | - | expression tag |
Gly 14 | - | expression tag |
Ala 15 | - | expression tag |
Ala 16 | - | expression tag |
Val 17 | - | expression tag |
Ala 18 | - | expression tag |
Gly 19 | - | expression tag |
Ala 20 | - | expression tag |
Phe 21 | - | expression tag |
Thr 22 | - | expression tag |
Gly 23 | - | expression tag |
Leu 24 | - | expression tag |
Gly 25 | - | expression tag |
Leu 26 | - | expression tag |
Ser 27 | - | expression tag |
Leu 28 | - | expression tag |
Ala 29 | - | expression tag |
Pro 30 | - | expression tag |
Thr 31 | - | expression tag |
Val 32 | - | expression tag |
Ala 33 | - | expression tag |
Arg 34 | - | expression tag |
Ala 35 | - | expression tag |
Trp 1006 | - | expression tag |
Ser 1007 | - | expression tag |
His 1008 | - | expression tag |
Pro 1009 | - | expression tag |
Gln 1010 | - | expression tag |
Phe 1011 | - | expression tag |
Glu 1012 | - | expression tag |
Lys 1013 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Met 1 | - | initiating methionine |
Asp 216 | - | expression tag |
Leu 217 | - | expression tag |
Ala 218 | - | expression tag |
Pro 219 | - | expression tag |
Ser 220 | - | expression tag |
Met 221 | - | expression tag |
Met 222 | - | expression tag |
Thr 223 | - | expression tag |
Arg 224 | - | expression tag |
Gln 225 | - | expression tag |
Gln 226 | - | expression tag |
Leu 227 | - | expression tag |
Phe 228 | - | expression tag |
Ala 229 | - | expression tag |
Arg 230 | - | expression tag |
Leu 231 | - | expression tag |
Phe 232 | - | expression tag |
Arg 233 | - | expression tag |
Pro 234 | - | expression tag |
Arg 235 | - | expression tag |
Ala 236 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 2 |
Total formula weight | 138918.5 | |
Non-Polymers* | Number of molecules | 15 |
Total formula weight | 3658.2 | |
All* | Total formula weight | 142576.7 |