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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

8BN3

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(B)		60S ribosomal protein L1-Apolymer21724524.81UniProt (P0CX43)
Pfam (PF00687)		Saccharomyces cerevisiae (baker's yeast)L10a,Large ribosomal subunit protein uL1-A
2B
(S5)		Rps5ppolymer20622908.31UniProt (A0A1L4AA68)
Pfam (PF00177)
UniProt (by SIFTS) (P26783)		Saccharomyces cerevisiae (baker's yeast)
3C
(C0)		Small ribosomal subunit protein eS10Apolymer9611585.11UniProt (Q08745)
Pfam (PF03501)		Saccharomyces cerevisiae (baker's yeast)
4D
(C4)		40S ribosomal protein S14-Bpolymer12713446.41UniProt (P39516)
Pfam (PF00411)		Saccharomyces cerevisiae (baker's yeast)RP59B,Small ribosomal subunit protein uS11-B
5E
(C5)		RPS15 isoform 1polymer12414155.71UniProt (A0A6A5Q6F2)
Pfam (PF00203)
UniProt (by SIFTS) (Q01855)		Saccharomyces cerevisiae (baker's yeast)
6F
(C8)		40S ribosomal protein S18-Apolymer14516940.41UniProt (P0CX55)
Pfam (PF00416)		Saccharomyces cerevisiae (baker's yeast)Small ribosomal subunit protein uS13-A
7G
(D0)		RPS20 isoform 1polymer10712190.21UniProt (A0A6A5PVE9)
Pfam (PF00338)
UniProt (by SIFTS) (P38701)		Saccharomyces cerevisiae (baker's yeast)
8H
(D5)		40S ribosomal protein S25polymer708001.41UniProt (A0A6A5PZ18)
UniProt (by SIFTS) (Q3E792)
Pfam (PF03297)		Saccharomyces cerevisiae (baker's yeast)
9I
(D8)		RPS28A isoform 1polymer637116.31UniProt (A0A6A5Q700)
Pfam (PF01200)
UniProt (by SIFTS) (Q3E7X9)		Saccharomyces cerevisiae (baker's yeast)
10J
(P)		60S ribosomal protein L41-Apolymer152108.71Pfam (PF05162)
UniProt (by SIFTS) (P0CX86)		Saccharomyces cerevisiae (baker's yeast)
11K
(3)		5S ribosomal RNApolymer12138951.11GenBank (1329886537)Saccharomyces cerevisiae (baker's yeast)
12L
(4)		5.8S ribosomal RNApolymer15850682.91GenBank (1331532632)Saccharomyces cerevisiae (baker's yeast)
13M
(1)		25S ribosomal RNApolymer31621022006.61Saccharomyces cerevisiae (baker's yeast)
14N
(2)		18S ribosomal RNApolymer1737559592.21Saccharomyces cerevisiae (baker's yeast)
15O
(S0)		Small ribosomal subunit protein uS2Apolymer25127920.11UniProt (P32905)
Pfam (PF00318)		Saccharomyces cerevisiae (baker's yeast)
16P
(S1)		Small ribosomal subunit protein eS1polymer21424312.21UniProt (A0A6A5PRY4)
Pfam (PF01015)
UniProt (by SIFTS) (P33442)		Saccharomyces cerevisiae (baker's yeast)
17Q
(S2)		RPS2 isoform 1polymer21723213.01UniProt (A0A6A5PWF7)
Pfam (PF00333)
Pfam (PF03719)
UniProt (by SIFTS) (P25443)		Saccharomyces cerevisiae (baker's yeast)
18R
(S3)		40S ribosomal protein S3polymer22324702.81UniProt (A0A6A5Q3Q1)
Pfam (PF07650)
Pfam (PF00189)
UniProt (by SIFTS) (P05750)		Saccharomyces cerevisiae (baker's yeast)
19S
(S6)		Small ribosomal subunit protein eS6Apolymer22625895.11UniProt (P0CX37)
Pfam (PF01092)		Saccharomyces cerevisiae (baker's yeast)
20T
(S7)		40S ribosomal protein S7-Apolymer18421000.51UniProt (P26786)
Pfam (PF01251)		Saccharomyces cerevisiae (baker's yeast)RP30,RP40,Small ribosomal subunit protein eS7-A
21U
(S8)		40S ribosomal protein S8polymer18821147.21UniProt (A0A0J9X221)
Pfam (PF01201)
UniProt (by SIFTS) (P0CX39)		Saccharomyces cerevisiae (baker's yeast)
22V
(S9)		Small ribosomal subunit protein uS4Apolymer18521210.71UniProt (O13516)
Pfam (PF00163)
Pfam (PF01479)		Saccharomyces cerevisiae (baker's yeast)
23W
(C1)		Small ribosomal subunit protein uS17Apolymer15517668.81UniProt (P0CX47)
Pfam (PF16205)
Pfam (PF00366)		Saccharomyces cerevisiae (baker's yeast)
24X
(C3)		40S ribosomal protein S13polymer15016928.71UniProt (P05756)
Pfam (PF08069)
Pfam (PF00312)		Saccharomyces cerevisiae (baker's yeast)S27a,Small ribosomal subunit protein uS15,YS15
25Y
(C6)		40S ribosomal protein S16-Apolymer14115659.21UniProt (P0CX51)
Pfam (PF00380)		Saccharomyces cerevisiae (baker's yeast)RP61R,Small ribosomal subunit protein uS9-A
26Z
(C7)		ES17polymer12013769.01UniProt (A0A0J9X224)
Pfam (PF00833)
UniProt (by SIFTS) (P02407)		Saccharomyces cerevisiae (baker's yeast)
27AA
(C9)		40S ribosomal protein S19-Apolymer14315810.91UniProt (P07280)
Pfam (PF01090)		Saccharomyces cerevisiae (baker's yeast)RP55A,S16a,Small ribosomal subunit protein eS19-A,YP45,YS16A
28BA
(D1)		Small ribosomal subunit protein eS21Apolymer879758.81UniProt (P0C0V8)
Pfam (PF01249)		Saccharomyces cerevisiae (baker's yeast)
29CA
(D2)		RPS22A isoform 1polymer12914518.91UniProt (A0A6A5PSE9)
Pfam (PF00410)
UniProt (by SIFTS) (P0C0W1)		Saccharomyces cerevisiae (baker's yeast)
30DA
(D3)		40S ribosomal protein S23-Apolymer14415942.71UniProt (P0CX29)
Pfam (PF00164)		Saccharomyces cerevisiae (baker's yeast)RP37,S28,Small ribosomal subunit protein uS12-A,YS14
31EA
(D4)		40S ribosomal protein S24-Apolymer13415231.61UniProt (P0CX31)
Pfam (PF01282)		Saccharomyces cerevisiae (baker's yeast)RP50,Small ribosomal subunit protein eS24-A
32FA
(D6)		RPS26B isoform 1polymer9711023.01UniProt (A0A6A5Q0E8)
Pfam (PF01283)
UniProt (by SIFTS) (P39939)		Saccharomyces cerevisiae (baker's yeast)
33GA
(D7)		40S ribosomal protein S27-Apolymer818762.21UniProt (P35997)
Pfam (PF01667)		Saccharomyces cerevisiae (baker's yeast)RP61,Small ribosomal subunit protein eS27-A,YS20
34HA
(D9)		RPS29A isoform 1polymer536335.31UniProt (A0A6A5PV92)
Pfam (PF00253)
UniProt (by SIFTS) (P41057)		Saccharomyces cerevisiae (baker's yeast)
35IA
(E0)		40S ribosomal protein S30-Apolymer606779.11UniProt (P0CX33)
Pfam (PF04758)		Saccharomyces cerevisiae (baker's yeast)Small ribosomal subunit protein eS30-A
36JA
(SR)		Small ribosomal subunit protein RACK1polymer31834710.01UniProt (P38011)
Pfam (PF00400)		Saccharomyces cerevisiae (baker's yeast)
37KA
(L2)		60S ribosomal protein L2-Apolymer25227217.31UniProt (P0CX45)
Pfam (PF00181)
Pfam (PF03947)		Saccharomyces cerevisiae (baker's yeast)L5,Large ribosomal subunit protein uL2-A,RP8,YL6
38LA
(L3)		60S ribosomal protein L3polymer38643719.61UniProt (A0A6A5Q627)
Pfam (PF00297)
UniProt (by SIFTS) (P14126)		Saccharomyces cerevisiae (baker's yeast)
39MA
(L4)		RPL4A isoform 1polymer36139027.91UniProt (A0A6A5Q3W0)
Pfam (PF00573)
Pfam (PF14374)
UniProt (by SIFTS) (P10664)		Saccharomyces cerevisiae (baker's yeast)
40NA
(L5)		RPL5 isoform 1polymer29533505.51UniProt (A0A6A5Q0W8)
Pfam (PF17144)
Pfam (PF14204)
UniProt (by SIFTS) (P26321)		Saccharomyces cerevisiae (baker's yeast)
41OA
(L6)		60S ribosomal protein L6-Apolymer15617579.71UniProt (by SIFTS) (Q02326)
Pfam (PF01159)		Saccharomyces cerevisiae (baker's yeast)
42PA
(L7)		60S ribosomal protein L7-Apolymer22225240.41UniProt (P05737)
Pfam (PF08079)
Pfam (PF00327)		Saccharomyces cerevisiae (baker's yeast)L6,Large ribosomal subunit protein uL30-A,RP11,YL8
43QA
(L8)		60S ribosomal protein L8-Apolymer23325815.01UniProt (P17076)
Pfam (PF01248)		Saccharomyces cerevisiae (baker's yeast)L4,L4-2,L7a-1,Large ribosomal subunit protein eL8-A,Maintenance of killer protein 7,RP6,YL5
44RA
(L9)		RPL9A isoform 1polymer18921376.81UniProt (A0A8H4FCT7)
Pfam (PF00347)
UniProt (by SIFTS) (P05738)		Saccharomyces cerevisiae (baker's yeast)
45SA
(M0)		RPL10 isoform 1polymer20924192.01UniProt (A0A6A5PUZ5)
Pfam (PF00252)
UniProt (by SIFTS) (P41805)		Saccharomyces cerevisiae (baker's yeast)
46TA
(M1)		RPL11B isoform 1polymer16819136.91UniProt (A0A6A5PYM2)
Pfam (PF00281)
Pfam (PF00673)
UniProt (by SIFTS) (P0C0W9)		Saccharomyces cerevisiae (baker's yeast)
47UA
(M3)		60S ribosomal protein L13-Apolymer19321885.21UniProt (Q12690)
Pfam (PF01294)		Saccharomyces cerevisiae (baker's yeast)Large ribosomal subunit protein eL13-A
48VA
(M4)		60S ribosomal protein L14-Apolymer13614976.81UniProt (P36105)
Pfam (PF00467)
Pfam (PF01929)		Saccharomyces cerevisiae (baker's yeast)Large ribosomal subunit protein eL14-A
49WA
(M5)		Ribosomal protein L15polymer20224222.01UniProt (A0A8H4BX09)
Pfam (PF00827)
UniProt (by SIFTS) (P05748)		Saccharomyces cerevisiae (baker's yeast)
50XA
(M6)		60S ribosomal protein L16-Apolymer19722029.01UniProt (P26784)
Pfam (PF00572)		Saccharomyces cerevisiae (baker's yeast)L13a,L21,Large ribosomal subunit protein uL13-A,RP22,YL15
51YA
(M7)		60S ribosomal protein L17-Apolymer18320458.31UniProt (P05740)
Pfam (PF00237)		Saccharomyces cerevisiae (baker's yeast)L20A,Large ribosomal subunit protein uL22-A,YL17
52ZA
(M8)		60S ribosomal protein L18-Apolymer18520478.11UniProt (P0CX49)
Pfam (PF17135)		Saccharomyces cerevisiae (baker's yeast)Large ribosomal subunit protein eL18-A,RP28
53AB
(M9)		60S ribosomal protein L19-Apolymer18821631.11UniProt (P0CX82)
Pfam (PF01280)		Saccharomyces cerevisiae (baker's yeast)L23,Large ribosomal subunit protein eL19-A,RP15L,RP33,YL14
54BB
(N0)		60S ribosomal protein L20-Apolymer17220478.91UniProt (P0CX23)
Pfam (PF01775)		Saccharomyces cerevisiae (baker's yeast)L18a,Large ribosomal subunit protein eL20-A
55CB
(N1)		60S ribosomal protein L21-Apolymer15918148.11UniProt (Q02753)
Pfam (PF01157)		Saccharomyces cerevisiae (baker's yeast)Large ribosomal subunit protein eL21-A
56DB
(N2)		60S ribosomal protein L22-Apolymer10011263.91UniProt (P05749)
Pfam (PF01776)		Saccharomyces cerevisiae (baker's yeast)L1c,Large ribosomal subunit protein eL22-A,RP4,YL31
57EB
(N3)		60S ribosomal protein L23-Apolymer13614362.81UniProt (P0CX41)
Pfam (PF00238)		Saccharomyces cerevisiae (baker's yeast)L17a,Large ribosomal subunit protein uL14-A,YL32
58FB
(N4)		RPL24A isoform 1polymer9811369.41UniProt (A0A6A5PY83)
Pfam (PF01246)
UniProt (by SIFTS) (P04449)		Saccharomyces cerevisiae (baker's yeast)
59GB
(N5)		60S ribosomal protein L25polymer12113771.21UniProt (P04456)
Pfam (PF03939)
Pfam (PF00276)		Saccharomyces cerevisiae (baker's yeast)Large ribosomal subunit protein uL23,RP16L,YL25,YP42'
60HB
(N6)		Large ribosomal subunit protein uL24Apolymer12614134.61UniProt (P05743)
Pfam (PF16906)
Pfam (PF00467)		Saccharomyces cerevisiae (baker's yeast)
61IB
(N7)		60S ribosomal protein L27-Apolymer13515437.21UniProt (P0C2H6)
Pfam (PF01777)		Saccharomyces cerevisiae (baker's yeast)Large ribosomal subunit protein eL27-A
62JB
(N8)		60S ribosomal protein L28polymer14816630.51UniProt (P02406)
Pfam (PF00828)		Saccharomyces cerevisiae (baker's yeast)L27a,L29,Large ribosomal subunit protein uL15,RP44,RP62,YL24
63KB
(N9)		60S ribosomal protein L29polymer566302.31UniProt (A0A6A5PWR1)
Pfam (PF01779)
UniProt (by SIFTS) (P05747)		Saccharomyces cerevisiae (baker's yeast)
64LB
(O0)		60S ribosomal protein L30polymer9710558.31UniProt (P14120)
Pfam (PF01248)		Saccharomyces cerevisiae (baker's yeast)L32,Large ribosomal subunit protein eL30,RP73,YL38
65MB
(O1)		60S ribosomal protein L31-Apolymer10912649.81UniProt (P0C2H8)
Pfam (PF01198)		Saccharomyces cerevisiae (baker's yeast)L34,Large ribosomal subunit protein eL31-A,YL28
66NB
(O2)		RPL32 isoform 1polymer12714478.11UniProt (A0A6A5Q1M9)
Pfam (PF01655)
UniProt (by SIFTS) (P38061)		Saccharomyces cerevisiae (baker's yeast)
67OB
(O3)		60S ribosomal protein L33-Apolymer10612045.91UniProt (P05744)
Pfam (PF01247)		Saccharomyces cerevisiae (baker's yeast)L37,Large ribosomal subunit protein eL33-A,RP47,YL37
68PB
(O4)		Large ribosomal subunit protein eL34Apolymer11112479.71UniProt (P87262)
Pfam (PF01199)		Saccharomyces cerevisiae (baker's yeast)
69QB
(O5)		60S ribosomal protein L35-Apolymer11913811.41UniProt (P0CX84)
Pfam (PF00831)		Saccharomyces cerevisiae (baker's yeast)Large ribosomal subunit protein uL29-A
70RB
(O6)		60S ribosomal protein L36-Apolymer9911020.11UniProt (P05745)
Pfam (PF01158)		Saccharomyces cerevisiae (baker's yeast)L39,Large ribosomal subunit protein eL36-A,YL39
71SB
(O7)		Large ribosomal subunit protein eL37Apolymer869675.11UniProt (P49166)
Pfam (PF01907)		Saccharomyces cerevisiae (baker's yeast)
72TB
(O8)		RPL38 isoform 1polymer778714.41UniProt (A0A6A5PUL8)
Pfam (PF01781)
UniProt (by SIFTS) (P49167)		Saccharomyces cerevisiae (baker's yeast)
73UB
(O9)		60S ribosomal protein L39polymer506227.41UniProt (P04650)
Pfam (PF00832)		Saccharomyces cerevisiae (baker's yeast)L46,Large ribosomal subunit protein eL39,YL40
74VB
(Q0)		60S ribosomal protein L40-Apolymer526032.31UniProt (P0CH08)
Pfam (PF01020)		Saccharomyces cerevisiae (baker's yeast)CEP52,Large ribosomal subunit protein eL40-A
75WB
(Q1)		Large ribosomal subunit protein eL41Bpolymer253354.21UniProt (P0CX87)
Pfam (PF05162)		Saccharomyces cerevisiae (baker's yeast)60S ribosomal protein L41-B,L47,YL41
76XB
(Q2)		60S ribosomal protein L42-Apolymer10512115.51UniProt (P0CX27)
Pfam (PF00935)		Saccharomyces cerevisiae (baker's yeast)L41,Large ribosomal subunit protein eL42-A,YL27,YP44
77YB
(Q3)		60S ribosomal protein L43-Apolymer919981.81UniProt (P0CX25)
Pfam (PF01780)		Saccharomyces cerevisiae (baker's yeast)L37a,Large ribosomal subunit protein eL43-A,YL35
78ZB
(SM)		STM1 isoform 1polymer11812767.01UniProt (A0A8H4FBL9)
Pfam (PF09598)
UniProt (by SIFTS) (P39015)		Saccharomyces cerevisiae (baker's yeast)
79AC
(eI)		Eukaryotic translation initiation factor 5Apolymer14515741.91UniProt (A0A8H8ULI0)
Pfam (PF21485)
Pfam (PF01287)
UniProt (by SIFTS) (P23301)		Saccharomyces cerevisiae (baker's yeast)
80BC
(S4)		Small ribosomal subunit protein eS4Apolymer26029338.11UniProt (P0CX35)
Pfam (PF08071)
Pfam (PF01479)
Pfam (PF00900)
Pfam (PF00467)
Pfam (PF16121)		Saccharomyces cerevisiae (baker's yeast)
81CC
(E1)		RPS31 isoform 1polymer718101.71UniProt (A0A6A5PU37)
Pfam (PF01599)
UniProt (by SIFTS) (P05759)		Saccharomyces cerevisiae (baker's yeast)
82AF, AG, AH, AI, AJ...
(1, 3, L3, 4, 2...)		MAGNESIUM IONnon-polymer24.3220Chemie (MG)
83AD, AE, BD, BE, CD...
(1, L2, L4, 2, M0...)		POTASSIUM IONnon-polymer39.172Chemie (K)
84TE
(1)		4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dionenon-polymer281.31Chemie (3HE)
85UE, VE, WE
(1)		SPERMIDINEnon-polymer145.23Chemie (SPD)
86AN, BN, NN, QN, RN...
(D6, D9, O4, O7, Q0...)		ZINC IONnon-polymer65.47Chemie (ZN)
87AO, AP, BO, BP, CO...
(L3, O9, L4, Q0, L5...)		waterwater18.01810Chemie (HOH)
Sequence modifications
C0: 1 - 96 (UniProt: Q08745)
PDBExternal DatabaseDetails
Ala 89Gly 89conflict
C1: 2 - 156 (UniProt: P0CX47)
PDBExternal DatabaseDetails
Ala 147Gly 147conflict
M0: 2 - 219 (UniProt: A0A6A5PUZ5)
PDBExternal DatabaseDetails
-Leu 103deletion
-Ser 104deletion
-Cys 105deletion
-Ala 106deletion
-Gly 107deletion
-Ala 108deletion
-Asp 109deletion
-Arg 110deletion
-Leu 111deletion
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains81
Total formula weight2969992.9
Non-Polymers*Number of molecules303
Total formula weight9337.1
All*Total formula weight2979330.0
*Water molecules are not included.

238895

PDB entries from 2025-07-16

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