8BIP
Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (C4) | 5S rRNA | polymer | 121 | 38951.1 | 1 | GenBank (1039023754) | Saccharomyces cerevisiae (baker's yeast) | |
| 2 | B (C3) | 5.8S rRNA | polymer | 158 | 50682.9 | 1 | GenBank (1767169448) | Saccharomyces cerevisiae (baker's yeast) | |
| 3 | C (LA) | 60S ribosomal protein L2-A | polymer | 251 | 27089.2 | 1 | UniProt (P0CX45) Pfam (PF00181) Pfam (PF03947) | Saccharomyces cerevisiae (baker's yeast) | L5,Large ribosomal subunit protein uL2-A,RP8,YL6 |
| 4 | D (LB) | 60S ribosomal protein L3 | polymer | 386 | 43719.6 | 1 | UniProt (P14126) Pfam (PF00297) | Saccharomyces cerevisiae (baker's yeast) | Large ribosomal subunit protein uL3,Maintenance of killer protein 8,RP1,Trichodermin resistance protein,YL1 |
| 5 | E (LC) | 60S ribosomal protein L4-A | polymer | 361 | 39027.9 | 1 | UniProt (P10664) Pfam (PF00573) Pfam (PF14374) | Saccharomyces cerevisiae (baker's yeast) | L2,Large ribosomal subunit protein uL4-A,RP2,YL2 |
| 6 | F (LD) | 60S ribosomal protein L5 | polymer | 294 | 33415.4 | 1 | UniProt (P26321) Pfam (PF17144) Pfam (PF14204) | Saccharomyces cerevisiae (baker's yeast) | L1,L1a,Large ribosomal subunit protein uL18,Ribosomal 5S RNA-binding protein,YL3 |
| 7 | G (LE) | 60S ribosomal protein L6-B | polymer | 175 | 19881.4 | 1 | UniProt (P05739) Pfam (PF01159) | Saccharomyces cerevisiae (baker's yeast) | L17,Large ribosomal subunit protein eL6-B,RP18,YL16 |
| 8 | H (LF) | 60S ribosomal protein L7-A | polymer | 222 | 25240.4 | 1 | UniProt (P05737) Pfam (PF08079) Pfam (PF00327) | Saccharomyces cerevisiae (baker's yeast) | L6,Large ribosomal subunit protein uL30-A,RP11,YL8 |
| 9 | I (LG) | 60S ribosomal protein L8-A | polymer | 233 | 25815.0 | 1 | UniProt (P17076) Pfam (PF01248) | Saccharomyces cerevisiae (baker's yeast) | L4,L4-2,L7a-1,Large ribosomal subunit protein eL8-A,Maintenance of killer protein 7,RP6,YL5 |
| 10 | J (LH) | 60S ribosomal protein L9-A | polymer | 191 | 21605.1 | 1 | UniProt (P05738) Pfam (PF00347) | Saccharomyces cerevisiae (baker's yeast) | L8,Large ribosomal subunit protein uL6-A,RP24,YL11 |
| 11 | K (LI) | 60S ribosomal protein L10 | polymer | 218 | 25080.1 | 1 | UniProt (P41805) Pfam (PF00252) | Saccharomyces cerevisiae (baker's yeast) | L9,Large ribosomal subunit protein uL16,Ubiquinol-cytochrome C reductase complex subunit VI-requiring protein |
| 12 | L (LJ) | 60S ribosomal protein L11-B | polymer | 169 | 19266.1 | 1 | UniProt (Q3E757) Pfam (PF00281) Pfam (PF00673) | Saccharomyces cerevisiae (baker's yeast) | L16,Large ribosomal subunit protein uL5-B,RP39,YL22 |
| 13 | M (LL) | 60S ribosomal protein L13-A | polymer | 193 | 21885.2 | 1 | UniProt (Q12690) Pfam (PF01294) | Saccharomyces cerevisiae (baker's yeast) | Large ribosomal subunit protein eL13-A |
| 14 | N (LM) | 60S ribosomal protein L14-A | polymer | 136 | 14976.8 | 1 | UniProt (P36105) Pfam (PF00467) Pfam (PF01929) | Saccharomyces cerevisiae (baker's yeast) | Large ribosomal subunit protein eL14-A |
| 15 | O (LN) | 60S ribosomal protein L15-A | polymer | 203 | 24351.2 | 1 | UniProt (P05748) Pfam (PF00827) | Saccharomyces cerevisiae (baker's yeast) | L13,Large ribosomal subunit protein eL15-A,RP15R,YL10,YP18 |
| 16 | P (LO) | 60S ribosomal protein L16-A | polymer | 197 | 22029.0 | 1 | UniProt (P26784) Pfam (PF00572) | Saccharomyces cerevisiae (baker's yeast) | L13a,L21,Large ribosomal subunit protein uL13-A,RP22,YL15 |
| 17 | Q (LP) | 60S ribosomal protein L17-A | polymer | 183 | 20458.3 | 1 | UniProt (P05740) Pfam (PF00237) | Saccharomyces cerevisiae (baker's yeast) | L20A,Large ribosomal subunit protein uL22-A,YL17 |
| 18 | R (LQ) | 60S ribosomal protein L18-A | polymer | 185 | 20478.1 | 1 | UniProt (P0CX49) Pfam (PF17135) | Saccharomyces cerevisiae (baker's yeast) | Large ribosomal subunit protein eL18-A,RP28 |
| 19 | S (LR) | 60S ribosomal protein L19-A | polymer | 188 | 21631.1 | 1 | UniProt (P0CX82) Pfam (PF01280) | Saccharomyces cerevisiae (baker's yeast) | L23,Large ribosomal subunit protein eL19-A,RP15L,RP33,YL14 |
| 20 | T (LS) | 60S ribosomal protein L20-A | polymer | 171 | 20347.7 | 1 | UniProt (P0CX23) Pfam (PF01775) | Saccharomyces cerevisiae (baker's yeast) | L18a,Large ribosomal subunit protein eL20-A |
| 21 | U (LT) | 60S ribosomal protein L21-A | polymer | 159 | 18148.1 | 1 | UniProt (Q02753) Pfam (PF01157) | Saccharomyces cerevisiae (baker's yeast) | Large ribosomal subunit protein eL21-A |
| 22 | V (LU) | 60S ribosomal protein L22-A | polymer | 100 | 11263.9 | 1 | UniProt (P05749) Pfam (PF01776) | Saccharomyces cerevisiae (baker's yeast) | L1c,Large ribosomal subunit protein eL22-A,RP4,YL31 |
| 23 | W (LV) | 60S ribosomal protein L23-A | polymer | 136 | 14362.8 | 1 | UniProt (P0CX41) Pfam (PF00238) | Saccharomyces cerevisiae (baker's yeast) | L17a,Large ribosomal subunit protein uL14-A,YL32 |
| 24 | X (LW) | 60S ribosomal protein L24-A | polymer | 126 | 14617.2 | 1 | UniProt (P04449) Pfam (PF01246) | Saccharomyces cerevisiae (baker's yeast) | L30,Large ribosomal subunit protein eL24-A,RP29,YL21 |
| 25 | Y (LX) | 60S ribosomal protein L25 | polymer | 121 | 13771.2 | 1 | UniProt (P04456) Pfam (PF03939) Pfam (PF00276) | Saccharomyces cerevisiae (baker's yeast) | Large ribosomal subunit protein uL23,RP16L,YL25,YP42' |
| 26 | Z (LY) | 60S ribosomal protein L26-A | polymer | 125 | 14005.5 | 1 | UniProt (P05743) Pfam (PF16906) Pfam (PF00467) | Saccharomyces cerevisiae (baker's yeast) | L33,Large ribosomal subunit protein uL24-A,YL33 |
| 27 | AA (LZ) | 60S ribosomal protein L27-A | polymer | 135 | 15437.2 | 1 | UniProt (P0C2H6) Pfam (PF01777) | Saccharomyces cerevisiae (baker's yeast) | Large ribosomal subunit protein eL27-A |
| 28 | BA (La) | 60S ribosomal protein L28 | polymer | 148 | 16630.5 | 1 | UniProt (P02406) Pfam (PF00828) | Saccharomyces cerevisiae (baker's yeast) | L27a,L29,Large ribosomal subunit protein uL15,RP44,RP62,YL24 |
| 29 | CA (Lb) | 60S ribosomal protein L29 | polymer | 58 | 6560.7 | 1 | UniProt (P05747) Pfam (PF01779) | Saccharomyces cerevisiae (baker's yeast) | Large ribosomal subunit protein eL29,YL43 |
| 30 | DA (Lc) | 60S ribosomal protein L30 | polymer | 96 | 10487.3 | 1 | UniProt (P14120) Pfam (PF01248) | Saccharomyces cerevisiae (baker's yeast) | L32,Large ribosomal subunit protein eL30,RP73,YL38 |
| 31 | EA (Ld) | 60S ribosomal protein L31-A | polymer | 109 | 12649.8 | 1 | UniProt (P0C2H8) Pfam (PF01198) | Saccharomyces cerevisiae (baker's yeast) | L34,Large ribosomal subunit protein eL31-A,YL28 |
| 32 | FA (Le) | 60S ribosomal protein L32 | polymer | 127 | 14478.1 | 1 | UniProt (P38061) Pfam (PF01655) | Saccharomyces cerevisiae (baker's yeast) | Large ribosomal subunit protein eL32 |
| 33 | GA (Lf) | 60S ribosomal protein L33-A | polymer | 106 | 12045.9 | 1 | UniProt (P05744) Pfam (PF01247) | Saccharomyces cerevisiae (baker's yeast) | L37,Large ribosomal subunit protein eL33-A,RP47,YL37 |
| 34 | HA (Lg) | 60S ribosomal protein L34-A | polymer | 112 | 12608.8 | 1 | UniProt (P87262) Pfam (PF01199) | Saccharomyces cerevisiae (baker's yeast) | Large ribosomal subunit protein eL34-A |
| 35 | IA (Lh) | 60S ribosomal protein L35-A | polymer | 119 | 13811.4 | 1 | UniProt (P0CX84) Pfam (PF00831) | Saccharomyces cerevisiae (baker's yeast) | Large ribosomal subunit protein uL29-A |
| 36 | JA (Li) | 60S ribosomal protein L36-A | polymer | 99 | 11020.1 | 1 | UniProt (P05745) Pfam (PF01158) | Saccharomyces cerevisiae (baker's yeast) | L39,Large ribosomal subunit protein eL36-A,YL39 |
| 37 | KA (Lj) | 60S ribosomal protein L37-A | polymer | 85 | 9588.0 | 1 | UniProt (P49166) Pfam (PF01907) | Saccharomyces cerevisiae (baker's yeast) | L43,Large ribosomal subunit protein eL37-A,YL35,YP55 |
| 38 | LA (Lk) | 60S ribosomal protein L38 | polymer | 77 | 8714.4 | 1 | UniProt (P49167) Pfam (PF01781) | Saccharomyces cerevisiae (baker's yeast) | Large ribosomal subunit protein eL38 |
| 39 | MA (Ll) | 60S ribosomal protein L39 | polymer | 50 | 6227.4 | 1 | UniProt (P04650) Pfam (PF00832) | Saccharomyces cerevisiae (baker's yeast) | L46,Large ribosomal subunit protein eL39,YL40 |
| 40 | NA (Lm) | 60S ribosomal protein L40-A | polymer | 52 | 6032.3 | 1 | UniProt (P0CH08) Pfam (PF01020) | Saccharomyces cerevisiae (baker's yeast) | CEP52,Large ribosomal subunit protein eL40-A |
| 41 | OA (Ln) | 60S ribosomal protein L41-A | polymer | 25 | 3354.2 | 1 | UniProt (P0CX86) Pfam (PF05162) | Saccharomyces cerevisiae (baker's yeast) | L47,Large ribosomal subunit protein eL41-A,YL41 |
| 42 | PA (Lo) | 60S ribosomal protein L42-A | polymer | 103 | 11840.2 | 1 | UniProt (P0CX27) Pfam (PF00935) | Saccharomyces cerevisiae (baker's yeast) | L41,Large ribosomal subunit protein eL42-A,YL27,YP44 |
| 43 | QA (Lp) | 60S ribosomal protein L43-A | polymer | 91 | 9981.8 | 1 | UniProt (P0CX25) Pfam (PF01780) | Saccharomyces cerevisiae (baker's yeast) | L37a,Large ribosomal subunit protein eL43-A,YL35 |
| 44 | RA (1) | 25S rRNA | polymer | 3395 | 1097132.6 | 1 | GenBank (1262303) | Saccharomyces cerevisiae (baker's yeast) | |
| 45 | SA (A) | N-terminal acetyltransferase B complex catalytic subunit NAT3 | polymer | 195 | 22953.3 | 1 | UniProt (Q06504) Pfam (PF00583) | Saccharomyces cerevisiae (baker's yeast) | NatB complex subunit NAT3,NatB Nalpha terminal acetyltransferase 3 |
| 46 | TA (B) | N-terminal acetyltransferase B complex subunit MDM20 | polymer | 796 | 92930.5 | 1 | UniProt (Q12387) Pfam (PF09797) | Saccharomyces cerevisiae (baker's yeast) | NatB complex subunit MDM20,Dislikes extra CIN8 protein 1,Mitochondrial distribution and morphology protein 20 |
| 47 | UA (8) | Nascent peptide chain | polymer | 23 | 1975.4 | 1 | Saccharomyces cerevisiae (baker's yeast) | ||
| 48 | AB, AC, AD, AE, AF... (LN, 1, LP, LR, LV...) | MAGNESIUM ION | non-polymer | 24.3 | 206 | Chemie (MG) | |||
| 49 | FB, GB, HB, IB, JB (Lg, Lj, Lm, Lo, Lp) | ZINC ION | non-polymer | 65.4 | 5 | Chemie (ZN) |
Sequence modifications
LE: 2 - 176 (UniProt: P05739)
LW: 1 - 126 (UniProt: P04449)
1: 1 - 3396 (GenBank: 1262303)
| PDB | External Database | Details |
|---|---|---|
| Ala 132 | Thr 132 | conflict |
| Ile 146 | Leu 146 | conflict |
| Met 173 | Leu 173 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Gln 104 | Asn 104 | conflict |
| Gln 109 | Leu 109 | conflict |
| Asp 112 | Asn 112 | conflict |
| Ala 119 | Glu 119 | conflict |
| PDB | External Database | Details |
|---|---|---|
| - | G 25080 | deletion |
| A 1962 | G 23613 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 47 |
| Total formula weight | 2018559.7 | |
| Non-Polymers* | Number of molecules | 211 |
| Total formula weight | 5333.9 | |
| All* | Total formula weight | 2023893.6 |
