8BG5
Crystal structure of the SARS-CoV-2 S RBD in complex with pT1631 scFV
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, C | pT1631 single-chain Fv | polymer | 281 | 29485.4 | 2 | Homo sapiens | ||
2 | B, D | Spike protein S1 | polymer | 229 | 25349.0 | 2 | UniProt (P0DTC2) Pfam (PF09408) In PDB | Severe acute respiratory syndrome coronavirus 2 | |
3 | B, D | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 2 | Chemie (NAG) | |||
4 | water | water | 18.0 | 250 | Chemie (HOH) |
Sequence modifications
B, D: 334 - 527 (UniProt: P0DTC2)
PDB | External Database | Details |
---|---|---|
Asp 528 | - | expression tag |
Asp 529 | - | expression tag |
Asp 530 | - | expression tag |
Asp 531 | - | expression tag |
Lys 532 | - | expression tag |
Ala 533 | - | expression tag |
Gly 534 | - | expression tag |
Trp 535 | - | expression tag |
Ser 536 | - | expression tag |
His 537 | - | expression tag |
Pro 538 | - | expression tag |
Gln 539 | - | expression tag |
Phe 540 | - | expression tag |
Glu 541 | - | expression tag |
Lys 542 | - | expression tag |
Gly 543 | - | expression tag |
Gly 544 | - | expression tag |
Gly 545 | - | expression tag |
Ser 546 | - | expression tag |
Gly 547 | - | expression tag |
Gly 548 | - | expression tag |
Gly 549 | - | expression tag |
Ser 550 | - | expression tag |
Gly 551 | - | expression tag |
Gly 552 | - | expression tag |
Gly 553 | - | expression tag |
Ser 554 | - | expression tag |
Trp 555 | - | expression tag |
Ser 556 | - | expression tag |
His 557 | - | expression tag |
Pro 558 | - | expression tag |
Gln 559 | - | expression tag |
Phe 560 | - | expression tag |
Glu 561 | - | expression tag |
Lys 562 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 4 |
Total formula weight | 109668.9 | |
Non-Polymers* | Number of molecules | 2 |
Total formula weight | 442.4 | |
All* | Total formula weight | 110111.3 |