8BG1
Crystal structure of the SARS-CoV-2 S RBD in complex with pT1511 scFV
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, D, G, J | pT1511 Fab heavy chain | polymer | 237 | 25399.2 | 4 | Homo sapiens (human) | ||
| 2 | B, E, H, K | pT1511 Fab light chain | polymer | 218 | 23913.6 | 4 | Homo sapiens (human) | ||
| 3 | C, F, I, L | Spike protein S1 | polymer | 199 | 22361.9 | 4 | UniProt (P0DTC2) Pfam (PF09408) In PDB | Homo sapiens (human) | |
| 4 | M | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 570.5 | 1 | In PDB GlyTouCan (G21290RB) | |||
| 5 | N | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 1 | In PDB GlyTouCan (G42666HT) | |||
| 6 | I, L | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 2 | Chemie (NAG) |
Sequence modifications
C, F, I, L: 334 - 527 (UniProt: P0DTC2)
| PDB | External Database | Details |
|---|---|---|
| Asp 528 | - | expression tag |
| Asp 529 | - | expression tag |
| Asp 530 | - | expression tag |
| Asp 531 | - | expression tag |
| Lys 532 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 12 |
| Total formula weight | 286699.1 | |
| Branched | Number of molecules | 2 |
| Total formula weight | 994.9 | |
| Non-Polymers* | Number of molecules | 2 |
| Total formula weight | 442.4 | |
| All* | Total formula weight | 288136.4 |
