8BEE
Cryo-EM structure of the Arabidopsis thaliana I+III2 supercomplex (CI peripheral core)
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | B | NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial | polymer | 218 | 24071.9 | 1 | UniProt (Q42577) Pfam (PF01058) In PDB | Arabidopsis thaliana (thale cress) | |
| 2 | C | NADH dehydrogenase [ubiquinone] iron-sulfur protein 3 | polymer | 190 | 22910.9 | 1 | UniProt (Q95748) Pfam (PF00329) In PDB | Arabidopsis thaliana (thale cress) | NADH dehydrogenase subunit 9 |
| 3 | D | NADH dehydrogenase subunit 7 | polymer | 394 | 45036.8 | 1 | UniProt (A0A2P2CLH2) Pfam (PF00346) UniProt (by SIFTS) (P93306) In PDB | Arabidopsis thaliana (thale cress) | |
| 4 | I | NADH dehydrogenase [ubiquinone] iron-sulfur protein 8-A, mitochondrial | polymer | 222 | 25536.8 | 1 | UniProt (Q42599) Pfam (PF12838) In PDB | Arabidopsis thaliana (thale cress) | |
| 5 | P | NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial | polymer | 402 | 43988.7 | 1 | UniProt (Q9SK66) Pfam (PF01370) In PDB | Arabidopsis thaliana (thale cress) | |
| 6 | U | Acyl carrier protein 2, mitochondrial | polymer | 126 | 14183.1 | 1 | UniProt (O80800) Pfam (PF00550) In PDB | Arabidopsis thaliana (thale cress) | MtACP-2,ACP,NADH-ubiquinone oxidoreductase 9.6 kDa subunit |
| 7 | V | Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial | polymer | 169 | 19201.9 | 1 | UniProt (Q9FLX7) Pfam (PF04716) In PDB | Arabidopsis thaliana (thale cress) | |
| 8 | W | NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 | polymer | 133 | 15102.3 | 1 | UniProt (Q9LHI0) In PDB | Arabidopsis thaliana (thale cress) | |
| 9 | Z | NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-A | polymer | 143 | 16145.6 | 1 | UniProt (Q8RWA7) Pfam (PF06212) In PDB | Arabidopsis thaliana (thale cress) | Protein MATERNAL EFFECT EMBRYO ARREST 4 |
| 10 | q | Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 | polymer | 159 | 18346.7 | 1 | UniProt (Q9M9M9) Pfam (PF05071) In PDB | Arabidopsis thaliana (thale cress) | |
| 11 | B, I | IRON/SULFUR CLUSTER | non-polymer | 351.6 | 3 | Chemie (SF4) | |||
| 12 | P | NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | non-polymer | 745.4 | 1 | Chemie (NDP) | |||
| 13 | W | S-[2-({N-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] dodecanethioate | non-polymer | 540.7 | 1 | Chemie (8Q1) | |||
| 14 | water | water | 18.0 | 631 | Chemie (HOH) |
Sequence modifications
D: 1 - 394 (UniProt: A0A2P2CLH2)
| PDB | External Database | Details |
|---|---|---|
| Ser 363 | Leu 363 | variant |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 10 |
| Total formula weight | 244524.8 | |
| Non-Polymers* | Number of molecules | 5 |
| Total formula weight | 2341.0 | |
| All* | Total formula weight | 246865.7 |
