8BBO
SARS-CoV-2 Delta-RBD complexed with BA.2-36 Fab
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | R | Spike glycoprotein | polymer | 202 | 22935.7 | 1 | UniProt (A0A8B6RM54) Pfam (PF09408) In PDB | Severe acute respiratory syndrome coronavirus 2 | S glycoprotein,E2,Peplomer protein |
| 2 | H | IGH@ protein | polymer | 224 | 23849.6 | 1 | UniProt (Q6GMX6) Pfam (PF07686) Pfam (PF07654) In PDB | Homo sapiens (human) | |
| 3 | L | Immunoglobulin kappa light chain | polymer | 213 | 23439.1 | 1 | UniProt (P0DOX7) Pfam (PF07686) Pfam (PF07654) In PDB | Homo sapiens (human) | Immunoglobulin kappa light chain EU |
| 4 | R | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 1 | Chemie (NAG) |
Sequence modifications
R: 333 - 528 (UniProt: A0A8B6RM54)
H: 1 - 224 (UniProt: Q6GMX6)
L: 2 - 213 (UniProt: P0DOX7)
| PDB | External Database | Details |
|---|---|---|
| His 327 | - | expression tag |
| His 328 | - | expression tag |
| His 329 | - | expression tag |
| His 330 | - | expression tag |
| His 331 | - | expression tag |
| His 332 | - | expression tag |
| Lys 478 | Thr 466 | conflict |
| Lys 527 | Pro 515 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Val 5 | Gln 24 | conflict |
| Arg 11 | Leu 30 | conflict |
| Gln 16 | Glu 35 | conflict |
| Asp 27 | Gly 46 | conflict |
| Asn 30 | - | insertion |
| Ile 33 | Tyr 51 | conflict |
| Asn 34 | - | insertion |
| Asn 37 | Ser 54 | conflict |
| Glu 46 | Gly 63 | conflict |
| Phe 54 | Tyr 71 | conflict |
| Thr 58 | Ser 75 | conflict |
| His 60 | Asn 77 | conflict |
| Ile 71 | Met 88 | conflict |
| Arg 75 | Thr 92 | conflict |
| Glu 79 | Gln 96 | conflict |
| Thr 83 | Lys 100 | conflict |
| Asn 85 | Ser 102 | conflict |
| Phe 96 | Tyr 113 | conflict |
| Gly 98 | Ala 115 | conflict |
| Gly 101 | Arg 118 | conflict |
| Thr 102 | Phe 119 | conflict |
| Asp 103 | Thr 120 | conflict |
| Asp 104 | - | insertion |
| Val 106 | Phe 122 | conflict |
| Arg 216 | Lys 232 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Ala 1 | - | expression tag |
| Asp 28 | Ser 28 | conflict |
| Ser 31 | Thr 31 | conflict |
| Ile 48 | Met 48 | conflict |
| Asp 50 | Lys 50 | conflict |
| His 55 | Glu 55 | conflict |
| Thr 60 | Ser 60 | conflict |
| Ser 63 | Ile 63 | conflict |
| Ser 85 | Thr 85 | conflict |
| Lys 92 | Asn 92 | conflict |
| - | Asp 94 | deletion |
| Tyr 94 | Ser 95 | conflict |
| Arg 95 | Lys 96 | conflict |
| Thr 96 | Met 97 | conflict |
| Arg 99 | Gln 100 | conflict |
| Ile 105 | Val 106 | conflict |
| Arg 107 | Gly 108 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 70224.4 | |
| Non-Polymers* | Number of molecules | 1 |
| Total formula weight | 221.2 | |
| All* | Total formula weight | 70445.6 |
