8B3F
Pol II-CSB-CSA-DDB1-ELOF1
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | DNA-directed RNA polymerase subunit | polymer | 1970 | 217450.1 | 1 | UniProt (A0A7M4DUC2) Pfam (PF04997) Pfam (PF05001) Pfam (PF00623) Pfam (PF04983) Pfam (PF05000) Pfam (PF04998) Pfam (PF04992) Pfam (PF04990) UniProt (by SIFTS) (A0A8D1DPV6) In PDB | Sus scrofa domesticus (domestic pig) | |
2 | B | DNA-directed RNA polymerase subunit beta | polymer | 1167 | 133201.6 | 1 | UniProt (A0A0B8RVL1) Pfam (PF04563) Pfam (PF04561) Pfam (PF04565) Pfam (PF04566) Pfam (PF04567) Pfam (PF00562) Pfam (PF04560) UniProt (by SIFTS) (I3LGP4) In PDB | Sus scrofa domesticus (domestic pig) | |
3 | C | DNA-directed RNA polymerase II subunit RPB3 | polymer | 275 | 31439.1 | 1 | UniProt (A0A481DF93) Pfam (PF01193) Pfam (PF01000) UniProt (by SIFTS) (I3LCH3) In PDB | Sus scrofa domesticus (domestic pig) | |
4 | D | RNA polymerase II subunit D | polymer | 142 | 16331.3 | 1 | UniProt (A0A287ADR4) Pfam (PF03874) UniProt (by SIFTS) (A0A4X1VM56) In PDB | Sus scrofa domesticus (domestic pig) | |
5 | E | DNA-directed RNA polymerase II subunit E | polymer | 210 | 24644.3 | 1 | UniProt (I3LSI7) Pfam (PF03871) Pfam (PF01191) In PDB | Sus scrofa domesticus (domestic pig) | RPB5 homolog |
6 | F | DNA-directed RNA polymerase II subunit F | polymer | 127 | 14477.0 | 1 | UniProt (F1SKN8) Pfam (PF01192) UniProt (by SIFTS) (A0A4X1VEK9) In PDB | Sus scrofa domesticus (domestic pig) | DNA-directed RNA polymerases I,II,and III subunit RPABC2,RPB6 homolog |
7 | G | DNA-directed RNA polymerase II subunit RPB7 | polymer | 172 | 19314.3 | 1 | Pfam (PF03876) Pfam (PF00575) UniProt (by SIFTS) (A0A4X1VKG7) In PDB | Sus scrofa domesticus (domestic pig) | |
8 | H | DNA-directed RNA polymerases I, II, and III subunit RPABC3 | polymer | 150 | 17162.3 | 1 | UniProt (A0A4X1ULF2) Pfam (PF03870) UniProt (by SIFTS) (I3LCB2) In PDB | Sus scrofa domesticus (domestic pig) | |
9 | I | DNA-directed RNA polymerase II subunit RPB9 | polymer | 125 | 14541.2 | 1 | UniProt (P60899) Pfam (PF02150) Pfam (PF01096) In PDB | Sus scrofa domesticus (domestic pig) | RNA polymerase II subunit B9,DNA-directed RNA polymerase II subunit I,RNA polymerase II 14.5 kDa subunit,RPB14.5 |
10 | J | DNA-directed RNA polymerases I, II, and III subunit RPABC5 | polymer | 67 | 7655.1 | 1 | UniProt (A0A7K6NXI9) Pfam (PF01194) UniProt (by SIFTS) (A0A8W4F9W9) In PDB | Sus scrofa domesticus (domestic pig) | |
11 | K | RNA_pol_L_2 domain-containing protein | polymer | 117 | 13310.3 | 1 | UniProt (A0A4X1UK25) Pfam (PF13656) UniProt (by SIFTS) (F1RKE4) In PDB | Sus scrofa domesticus (domestic pig) | |
12 | L | RNA polymerase II subunit K | polymer | 58 | 7018.2 | 1 | UniProt (I3LN51) Pfam (PF03604) UniProt (by SIFTS) (A0A4X1TRS6) In PDB | Sus scrofa domesticus (domestic pig) | |
13 | M | Transcription elongation factor 1 homolog | polymer | 83 | 9475.9 | 1 | UniProt (A0A024R7E8) Pfam (PF05129) UniProt (by SIFTS) (A0A8D1B522) In PDB | Homo sapiens (human) | |
14 | N | NTS | polymer | 52 | 16027.3 | 1 | Homo sapiens | ||
15 | P | RNA | polymer | 10 | 3264.0 | 1 | Homo sapiens | ||
16 | T | TS | polymer | 52 | 15824.1 | 1 | Homo sapiens | ||
17 | a | DNA excision repair protein ERCC-8 | polymer | 396 | 44107.2 | 1 | UniProt (Q13216) Pfam (PF00400) In PDB | Homo sapiens (human) | Cockayne syndrome WD repeat protein CSA |
18 | b | DNA excision repair protein ERCC-6 | polymer | 1496 | 168945.8 | 1 | UniProt (Q03468) Pfam (PF00176) Pfam (PF00271) In PDB | Homo sapiens (human) | ATP-dependent helicase ERCC6,Cockayne syndrome protein CSB |
19 | d | DNA damage-binding protein 1 | polymer | 1140 | 127097.5 | 1 | UniProt (Q16531) Pfam (PF10433) Pfam (PF03178) In PDB | Homo sapiens (human) | DDB p127 subunit,DNA damage-binding protein a,DDBa,Damage-specific DNA-binding protein 1,HBV X-associated protein 1,XAP-1,UV-damaged DNA-binding factor,UV-damaged DNA-binding protein 1,UV-DDB 1,XPE-binding factor,XPE-BF,Xeroderma pigmentosum group E-complementing protein,XPCe |
20 | J, L, M, A, B... | ZINC ION | non-polymer | 65.4 | 9 | Chemie (ZN) | |||
21 | A | MAGNESIUM ION | non-polymer | 24.3 | 1 | Chemie (MG) |
Sequence modifications
A: 1 - 1970 (UniProt: A0A7M4DUC2)
b: 1 - 1493 (UniProt: Q03468)
PDB | External Database | Details |
---|---|---|
- | Tyr 1636 | deletion |
- | Ser 1637 | deletion |
- | Pro 1638 | deletion |
- | Thr 1639 | deletion |
- | Ser 1640 | deletion |
- | Pro 1641 | deletion |
- | Ser 1642 | deletion |
- | Tyr 1643 | deletion |
- | Ser 1644 | deletion |
- | Pro 1645 | deletion |
- | Thr 1646 | deletion |
- | Ser 1647 | deletion |
- | Pro 1648 | deletion |
- | Ser 1649 | deletion |
PDB | External Database | Details |
---|---|---|
Ser -2 | - | expression tag |
Asn -1 | - | expression tag |
Ala 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 19 |
Total formula weight | 901286.6 | |
Non-Polymers* | Number of molecules | 10 |
Total formula weight | 613.0 | |
All* | Total formula weight | 901899.5 |