8B3D
Structure of the Pol II-TCR-ELOF1 complex.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | DNA-directed RNA polymerase subunit | polymer | 1970 | 217450.1 | 1 | UniProt (A0A7M4DUC2) Pfam (PF04997) Pfam (PF05001) Pfam (PF00623) Pfam (PF04983) Pfam (PF05000) Pfam (PF04998) Pfam (PF04992) Pfam (PF04990) UniProt (by SIFTS) (A0A8D1DPV6) | Sus scrofa domesticus (domestic pig) | |
| 2 | B (B) | DNA-directed RNA polymerase subunit beta | polymer | 1167 | 133201.6 | 1 | UniProt (A0A0B8RVL1) Pfam (PF04563) Pfam (PF04561) Pfam (PF04565) Pfam (PF04566) Pfam (PF04567) Pfam (PF00562) Pfam (PF04560) UniProt (by SIFTS) (I3LGP4) | Sus scrofa domesticus (domestic pig) | |
| 3 | C (C) | DNA-directed RNA polymerase II subunit RPB3 | polymer | 275 | 31439.1 | 1 | UniProt (A0A481DF93) Pfam (PF01193) Pfam (PF01000) UniProt (by SIFTS) (I3LCH3) | Sus scrofa domesticus (domestic pig) | |
| 4 | D (D) | RNA polymerase II subunit D | polymer | 142 | 16331.3 | 1 | UniProt (A0A287ADR4) Pfam (PF03874) UniProt (by SIFTS) (A0A4X1VM56) | Sus scrofa domesticus (domestic pig) | |
| 5 | E (E) | DNA-directed RNA polymerase II subunit E | polymer | 210 | 24644.3 | 1 | UniProt (I3LSI7) Pfam (PF03871) Pfam (PF01191) | Sus scrofa domesticus (domestic pig) | RPB5 homolog |
| 6 | F (F) | DNA-directed RNA polymerase II subunit F | polymer | 127 | 14477.0 | 1 | UniProt (F1SKN8) Pfam (PF01192) UniProt (by SIFTS) (A0A4X1VEK9) | Sus scrofa domesticus (domestic pig) | DNA-directed RNA polymerases I,II,and III subunit RPABC2,RPB6 homolog |
| 7 | G (G) | RPB7 | polymer | 254 | 28095.4 | 1 | Pfam (PF03876) Pfam (PF00575) UniProt (by SIFTS) (A0A4X1VKG7) | Sus scrofa domesticus | |
| 8 | H (H) | DNA-directed RNA polymerases I, II, and III subunit RPABC3 | polymer | 150 | 17162.3 | 1 | UniProt (A0A4X1ULF2) Pfam (PF03870) UniProt (by SIFTS) (I3LCB2) | Sus scrofa domesticus (domestic pig) | |
| 9 | I (I) | DNA-directed RNA polymerase II subunit RPB9 | polymer | 125 | 14541.2 | 1 | UniProt (P60899) Pfam (PF02150) Pfam (PF01096) | Sus scrofa domesticus (domestic pig) | RNA polymerase II subunit B9,DNA-directed RNA polymerase II subunit I,RNA polymerase II 14.5 kDa subunit,RPB14.5 |
| 10 | J (J) | DNA-directed RNA polymerases I, II, and III subunit RPABC5 | polymer | 67 | 7655.1 | 1 | UniProt (A0A7K6NXI9) Pfam (PF01194) UniProt (by SIFTS) (A0A8W4F9W9) | Sus scrofa domesticus (domestic pig) | |
| 11 | K (K) | RNA_pol_L_2 domain-containing protein | polymer | 117 | 13310.3 | 1 | UniProt (A0A4X1UK25) Pfam (PF13656) UniProt (by SIFTS) (F1RKE4) | Sus scrofa domesticus (domestic pig) | |
| 12 | L (L) | RNA polymerase II subunit K | polymer | 58 | 7018.2 | 1 | UniProt (I3LN51) Pfam (PF03604) UniProt (by SIFTS) (A0A4X1TRS6) | Sus scrofa domesticus (domestic pig) | |
| 13 | M (M) | Transcription elongation factor 1 homolog | polymer | 83 | 9475.9 | 1 | UniProt (A0A024R7E8) Pfam (PF05129) UniProt (by SIFTS) (A0A8D1B522) | Homo sapiens (human) | |
| 14 | N (N) | NTS | polymer | 52 | 16027.3 | 1 | Homo sapiens | ||
| 15 | O (P) | RNA | polymer | 10 | 3264.0 | 1 | Homo sapiens | ||
| 16 | P (T) | TS | polymer | 52 | 15824.1 | 1 | Homo sapiens | ||
| 17 | Q (a) | DNA excision repair protein ERCC-8 | polymer | 396 | 44107.2 | 1 | UniProt (Q13216) Pfam (PF00400) | Homo sapiens (human) | Cockayne syndrome WD repeat protein CSA |
| 18 | R (b) | DNA excision repair protein ERCC-6 | polymer | 1493 | 168673.5 | 1 | UniProt (Q03468) Pfam (PF00176) Pfam (PF00271) | Homo sapiens (human) | ATP-dependent helicase ERCC6,Cockayne syndrome protein CSB |
| 19 | S (c) | UV-stimulated scaffold protein A | polymer | 709 | 80721.7 | 1 | UniProt (Q2YD98) Pfam (PF20867) Pfam (PF09740) | Homo sapiens (human) | |
| 20 | T (d) | DNA damage-binding protein 1 | polymer | 1140 | 127097.5 | 1 | UniProt (Q16531) Pfam (PF10433) Pfam (PF03178) | Homo sapiens (human) | DDB p127 subunit,DNA damage-binding protein a,DDBa,Damage-specific DNA-binding protein 1,HBV X-associated protein 1,XAP-1,UV-damaged DNA-binding factor,UV-damaged DNA-binding protein 1,UV-DDB 1,XPE-binding factor,XPE-BF,Xeroderma pigmentosum group E-complementing protein,XPCe |
| 21 | AA, BA, CA, DA, HA... (I, J, L, M, c...) | ZINC ION | non-polymer | 65.4 | 10 | Chemie (ZN) | |||
| 22 | GA, W (b, A) | MAGNESIUM ION | non-polymer | 24.3 | 2 | Chemie (MG) | |||
| 23 | EA (b) | ADENOSINE-5'-DIPHOSPHATE | non-polymer | 427.2 | 1 | Chemie (ADP) | |||
| 24 | FA (b) | BERYLLIUM TRIFLUORIDE ION | non-polymer | 66.0 | 1 | Chemie (BEF) |
Sequence modifications
A: 1 - 1970 (UniProt: A0A7M4DUC2)
| PDB | External Database | Details |
|---|---|---|
| - | Tyr 1636 | deletion |
| - | Ser 1637 | deletion |
| - | Pro 1638 | deletion |
| - | Thr 1639 | deletion |
| - | Ser 1640 | deletion |
| - | Pro 1641 | deletion |
| - | Ser 1642 | deletion |
| - | Tyr 1643 | deletion |
| - | Ser 1644 | deletion |
| - | Pro 1645 | deletion |
| - | Thr 1646 | deletion |
| - | Ser 1647 | deletion |
| - | Pro 1648 | deletion |
| - | Ser 1649 | deletion |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 20 |
| Total formula weight | 990517.1 | |
| Non-Polymers* | Number of molecules | 14 |
| Total formula weight | 1195.9 | |
| All* | Total formula weight | 991713.0 |
